Abstract
Several studies reported that autoimmune diseases share a number of susceptibility genes. Of these genes, a SNP rs7708392 in TNIP1 was reported to be associated with systemic lupus erythematosus (SLE). Autoimmune hepatitis (AIH), a rare chronic progressive liver disease, shares some clinical features with SLE. Therefore, we investigated whether the SNP is associated with Japanese AIH. An association study of rs7708392 was conducted in 343 Japanese AIH patients and 828 controls. We found that rs7708392 is associated with AIH (P = 0.0236, odds ratio (OR) 1.26, 95% confidence interval (CI): 1.03–1.54), under the allele model for C allele. Significant differences of clinical characteristics of the AIH patients with or without G allele of rs7708392 were not detected. Of interest, the association was stronger in AIH without HLA-DRB1*04:05 allele (P = 0.0063, Q = 0.0127, OR 1.48, 95% CI: 1.12–1.96), though the association was not detected in AIH with DRB1*04:05. The C allele of rs7708392 was associated with AIH, especially AIH without DRB1*04:05, an already established risk factor.
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References
Manns MP, Czaja AJ, Gorham JD, Krawitt EL, Mieli-Vergani G, Vergani D, et al. Diagnosis and management of autoimmune hepatitis. Hepatology. 2010;51:2193–213.
Moy L, Levine J. Autoimmune hepatitis: a classic autoimmune liver disease. Curr Probl Pediatr Adolesc Health Care. 2014;44:341–6.
Carbone M, Neuberger JM. Autoimmune liver disease, autoimmunity and liver transplantation. J Hepatol. 2014;60:210–23.
Wang Q, Yang F, Miao Q, Krawitt EL, Gershwin ME, Ma X. The clinical phenotypes of autoimmune hepatitis: A comprehensive review. J Autoimmun. 2016;66:98–107.
Yoshizawa K, Joshita S, Matsumoto A, Umemura T, Tanaka E, Morita S, et al. Incidence and prevalence of autoimmune hepatitis in the Ueda area, Japan. Hepatol Res. 2016;46:878–83.
Mackay IR, Taft LI, Cowling DC. Lupoid hepatitis. Lancet. 1956;271:1323–6.
Mackay IR, Weiden S, Hasker J. Autoimmune hepatitis. Ann N Y Acad Sci. 1965;124:767–80.
Mackay IR, Taft LI, Cowling DC. Lupoid hepatitis and the hepatic lesions of systemic lupus erythematosus. Lancet. 1959;1:65–69.
Strettell MD, Donaldson PT, Thomson LJ, Santrach PJ, Moore SB, Czaja AJ, et al. Allelic basis for HLA-encoded susceptibility to type 1 autoimmune hepatitis. Gastroenterology. 1997;112:2028–35.
Umemura T, Katsuyama Y, Yoshizawa K, Kimura T, Joshita S, Komatsu M, et al. Human leukocyte antigen class II haplotypes affect clinical characteristics and progression of type 1 autoimmune hepatitis in Japan. PLoS ONE. 2014;9:e100565.
Furumoto Y, Asano T, Sugita T, Abe H, Chuganji Y, Fujiki K, et al. Evaluation of the role of HLA-DR antigens in Japanese type 1 autoimmune hepatitis. BMC Gastroenterol. 2015;15:144.
Maeda Y, Migita K, Higuchi O, Mukaino A, Furukawa H, Komori A, et al. Association between anti-ganglionic nicotinic acetylcholine receptor (gAChR) antibodies and HLA-DRB1 alleles in the Japanese population. PLoS ONE. 2016;11:e0146048.
de Boer YS, van Gerven NM, Zwiers A, Verwer BJ, van Hoek B, van Erpecum KJ, et al. Genome-wide association study identifies variants associated with autoimmune hepatitis type 1. Gastroenterology. 2014;147:443–52 e445.
Migita K, Nakamura M, Abiru S, Jiuchi Y, Nagaoka S, Komori A, et al. Association of STAT4 polymorphisms with susceptibility to type-1 autoimmune hepatitis in the Japanese population. PLoS ONE. 2013;8:e71382.
Migita K, Jiuchi Y, Furukawa H, Nakamura M, Komori A, Yasunami M, et al. Lack of association between the CARD10rs6000782 polymorphism and type 1 autoimmune hepatitis in a Japanese population. BMC Res Notes. 2015;8:777.
Umemura T, Joshita S, Yamazaki T, Komatsu M, Katsuyama Y, Yoshizawa K, et al. Genetic association of PTPN22 polymorphisms with autoimmune hepatitis and primary biliary cholangitis in Japan. Sci Rep. 2016;6:29770.
Higuchi T, Oka S, Furukawa H, Nakamura M, Komori A, Abiru S, et al. Association of a single nucleotide polymorphism upstream of ICOS with Japanese autoimmune hepatitis type 1. J Hum Genet. 2017;62:481–4.
Umemura T, Joshita S, Hamano H, Yoshizawa K, Kawa S, Tanaka E, et al. Association of autoimmune hepatitis with Src homology 2 adaptor protein 3 gene polymorphisms in Japanese patients. J Hum Genet. 2017;62:963–7.
Lettre G, Rioux JD. Autoimmune diseases: insights from genome-wide association studies. Hum Mol Genet. 2008;17:R116–121.
Han JW, Zheng HF, Cui Y, Sun LD, Ye DQ, Hu Z, et al. Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus. Nat Genet. 2009;41:1234–7.
Gateva V, Sandling JK, Hom G, Taylor KE, Chung SA, Sun X, et al. A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus. Nat Genet. 2009;41:1228–33.
Kawasaki A, Ito S, Furukawa H, Hayashi T, Goto D, Matsumoto I, et al. Association of TNFAIP3 interacting protein 1, TNIP1 with systemic lupus erythematosus in a Japanese population: a case–control association study. Arthritis Res Ther. 2010;12:R174.
Nair RP, Duffin KC, Helms C, Ding J, Stuart PE, Goldgar D, et al. Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappa B pathways. Nat Genet. 2009;41:199–204.
Zuo X, Sun L, Yin X, Gao J, Sheng Y, Xu J, et al. Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis. Nat Commun. 2015;6:6793.
Allanore Y, Saad M, Dieude P, Avouac J, Distler JH, Amouyel P, et al. Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis. PLoS Genet. 2011;7:e1002091.
Bossini-Castillo L, Martin JE, Broen J, Simeon CP, Beretta L, Gorlova OY, et al. Confirmation of TNIP1 but not RHOB and PSORS1C1 as systemic sclerosis risk factors in a large independent replication study. Ann Rheum Dis. 2013;72:602–7.
Verstrepen L, Carpentier I, Verhelst K, Beyaert R. ABINs: A20 binding inhibitors of NF-kappa B and apoptosis signaling. Biochem Pharmacol. 2009;78:105–14.
Kawasaki A, Ito I, Ito S, Hayashi T, Goto D, Matsumoto I, et al. Association of TNFAIP3 polymorphism with susceptibility to systemic lupus erythematosus in a Japanese population. J Biomed Biotechnol. 2010;2010:207578.
Migita K, Watanabe Y, Jiuchi Y, Nakamura Y, Saito A, Yagura M, et al. Evaluation of risk factors for the development of cirrhosis in autoimmune hepatitis: Japanese NHO-AIH prospective study. J Gastroenterol. 2011;46(Suppl 1):56–62.
Migita K, Watanabe Y, Jiuchi Y, Nakamura Y, Saito A, Yagura M, et al. Hepatocellular carcinoma and survival in patients with autoimmune hepatitis (Japanese National Hospital Organization-autoimmune hepatitis prospective study). Liver Int. 2012;32:837–44.
Alvarez F, Berg PA, Bianchi FB, Bianchi L, Burroughs AK, Cancado EL, et al. International Autoimmune Hepatitis Group report: review of criteria for diagnosis of autoimmune hepatitis. J Hepatol. 1999;31:929–38.
Kamatani N, Kawamoto M, Kitamura Y, Harigai M, Okumoto T, Sumino Y. Establishment of B-cell lines derived from 996 Japanese individuals. Tissue Cult Res Commun. 2004;23:71–80.
Oka S, Furukawa H, Kawasaki A, Shimada K, Sugii S, Hashimoto A, et al. Protective effect of the HLA-DRB1*13:02 allele in Japanese rheumatoid arthritis patients. PLoS ONE. 2014;9:e99453.
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B. 1995;57:289–300.
Dupont WD, Plummer WD Jr. Power and sample size calculations. A review and computer program. Control Clin Trials. 1990;11:116–28.
Furukawa H, Kawasaki A, Oka S, Ito I, Shimada K, Sugii S, et al. Human leukocyte antigens and systemic lupus erythematosus: a protective role for the HLA-DR6 alleles DRB1*13:02 and *14:03. PLoS ONE. 2014;9:e87792.
Kawasaki A, Ito I, Hikami K, Ohashi J, Hayashi T, Goto D, et al. Role of STAT4 polymorphisms in systemic lupus erythematosus in a Japanese population: a case–control association study of the STAT1-STAT4 region. Arthritis Res Ther. 2008;10:R113.
Marx J. How the glucocorticoids suppress immunity. Science. 1995;270:232–3.
Ward LD, Kellis M. HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants. Nucleic Acids Res. 2012;40:D930–934.
Westra HJ, Peters MJ, Esko T, Yaghootkar H, Schurmann C, Kettunen J, et al. Systematic identification of trans eQTLs as putative drivers of known disease associations. Nat Genet. 2013;45:1238–43.
Linden M, Ramirez Sepulveda JI, James T, Thorlacius GE, Brauner S, Gomez-Cabrero D, et al. Sex influences eQTL effects of SLE and Sjogren’s syndrome-associated genetic polymorphisms. Biol Sex Differ. 2017;8:34.
Acknowledgements
We would like to acknowledge NHO-AIH study group. The members of the NHO-AIH study group are: Kiyoshi Migita (Department of Rheumatology, School of Medicine, Fukushima Medical University), Masashi Ohtani, Seigo Abiru, Yuka Jiuchi, Shinya Nagaoka, Sung Kwan Bae, Atsumasa Komori, Masashi Ohtani, Satoru Hashimoto, Shigemune Bekki, Katsumi Yamasaki, Hiroshi Yatsuhashi, Hiromi Ishibashi (NHO Nagasaki Medical Center), Minoru Nakamura (Department of Hepatology, Nagasaki University Graduate School of Biomedical Sciences), Michio Yasunami (Life Science Institute, Saga-ken Medical Centre Koseikan), Yukio Watanabe, Yoko Nakamura (NHO Sagamihara National Hospital), Michiyasu Yagura (NHO Tokyo National Hospital), Tatsuji Komatsu (NHO Yokohama Medical Center), Masaaki Shimada (NHO Nagoya Medical Center), Hiroshi Kouno (NHO Kure Medical Center), Taizo Hijioka (NHO Osaka Minami Medical Center), Motoyuki Kohjima (NHO Kyushu Medical Center), Michio Kato (NHO Minami Wakayama Medical Center), Kaname Yoshizawa (NHO Shinshu Ueda Medical Center), Hajime Ohta (NHO Kanazawa Medical Center), Eiichi Takezaki (NHO Higashi Hiroshima Medical Center), Hideo Nishimura (NHO Asahikawa Medical Center), Takeaki Sato (NHO Kokura Medical Center), Keisuke Ario (NHO Ureshino Medical Center), Noboru Hirashima (NHO Higashi Nagoya National Hospital), Yukio Oohara (NHO Hokkaido Medical Center), Haruhiro Yamashita (NHO Okayama Medical Center), Atsushi Naganuma (NHO Takasaki General Medical Center), Toyokichi Muro (NHO Oita Medical Center), Hironori Sakai (NHO Beppu Medical Center), Eiji Mita (NHO Osaka Medical Center), Kazuhiro Sugi (NHO Kumamoto Medical Center), Fujio Makita (NHO Nishigunma National Hospital).
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The work was supported by Grants-in-Aid for Clinical Research from National Hospital Organization. The funders had no role in study design, data collection and analysis, decision to publish, or preparing the manuscript.
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Oka, S., Higuchi, T., Furukawa, H. et al. Association of a single nucleotide polymorphism in TNIP1 with type-1 autoimmune hepatitis in the Japanese population. J Hum Genet 63, 739–744 (2018). https://doi.org/10.1038/s10038-018-0440-0
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DOI: https://doi.org/10.1038/s10038-018-0440-0


