Table 2 Median allele frequencies and types of somatic mutations newly detected or undetected in PDX models.

From: Complex genetic and histopathological study of 15 patient-derived xenografts of aggressive lymphomas

A.

Median AF of N/D mutations in PDXs

Median AF of N/U mutations in patient samples

All PDX models

0.18

0.15

DLBCL

0.27

0.14

MCL

0.18

0.36

T-NHL

0.15

0.14

BLa

0.17

0.11

B.

N/D from the Gene-list

N/U from the Gene-list

VFN-D1 vs P3

ETV6

RUNX1

VFN-D3 vs P1

PDGFRA

0

VFN-D4 vs P4

NF1, HIPK3

0

VFN-D5 vs P5

ITPKB, ENAM

0

VFN-D6 vs P2

IRF4, RNF213, MYC, FOXO1, KLHL14, KLHL14, OSBPL10

0

VFN-D20 vs P7

0

0

VFN-M1 vs P10

0

0

VFN-M5R1 vs P9

0

0

VFN-T3 vs P11

STAT1, ZNF708, RHOA

0

VFN-T4 vs P15

SPEN, FSIP2, DCC, ZNF532

0

VFN-T5 vs P14

AIRD1B, VPS13A, MYD88

0

VFN-T6 vs P13

IRF2BP2, VAV1, TCF20

BIRC6

VFN-B3 vs P8

0

0

  1. A Median allele frequencies (AF) of newly detected (N/D) mutations in PDX models and newly undetected (N/U) mutations in primary lymphoma samples, B N/D and N/U variants from the list of genes of special interest (Gene-list), 0 no gene list variant, BL Burkitt lymphoma, DLBCL diffuse large B-cell lymphoma, MCL mantle cell lymphoma, P1-P15 patient primary lymphoma samples, T-NHL T-cell non-Hodgkin lymphomas, VFN PDX models derived from primary lymphoma samples P1-P15.
  2. aOnly 1 PDX model.