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How should myelodysplastic neoplasms with isolated deletion 5q and TP53 multihit alterations be classified?

Abstract

Myelodysplastic neoplasms (MDS) with TP53 multihit alterations are associated with dismal outcomes. MDS with isolated del(5q) present favorable prognosis but is defined by the absence of TP53 multihit alterations. However, whether TP53 multihit alterations exert the same adverse impact in this genetic context remains uncertain. We retrospectively analyzed the characteristics and outcome of 43 patients with MDS with isolated del(5q) harboring TP53 multihit alterations (MDS-del(5q) TP53 multihit) and compared with 68 patients with low-blast MDS with TP53 multihit and without isolated del(5q) (MDS-LB TP53 multihit). Patients with MDS-del(5q) TP53 multihit showed significantly higher platelet counts, more frequent SF3B1 mutations, were less often classified as high-risk by IPSS-R or IPSS-M, and had significantly better outcomes than patients with MDS-LB TP53 multihit: overall survival of 70.2 vs 13.9 months, and time to acute myeloid leukemia progression (AML) of 31.9 vs 7.2 months, respectively. Moreover, the superior outcomes of MDS-del(5q) TP53 multihit patients persisted significant even when compared with MDS-LB TP53 multihit cases without complex karyotype (survival of 70.2 vs 39.9 months; time to AML progression of 31.9 vs 11.4 months). These findings indicate that, in MDS-del(5q) the adverse impact of TP53 multihit alterations may be less important than in other MDS subtypes.

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Fig. 1
The alternative text for this image may have been generated using AI.
Fig. 2: Comparison of outcomes among patients with MDS-LB TP53 multihit and MDS-del(5q) TP53 multihit.
The alternative text for this image may have been generated using AI.
Fig. 3: Comparison of outcomes among patients with MDS-LB and TP53 multihit according to karyotype status (with vs without complex karyotype), and those with MDS-del(5q) and TP53 multihit.
The alternative text for this image may have been generated using AI.

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Data availability

Data have been deposited in European Genome-Phenome Archive (EGA) at https://ega-archive.org/studies/EGAS50000000649 (accession number EGAS50000000649).

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Authors and Affiliations

Authors

Contributions

MJM and DV designed the study, analyzed the data and wrote the manuscript. VN performed statistical analysis. TG, TB, FL, BX, NDV and AJ collected clinical data and contributed to patient management. PA, LP, CH, MMg, FSol, FS, ES, BB, and TH performed molecular and genomic analyses. OC, NHA, TK, AMZ, RSK, CG, JM, AAK, MS, RB, YW, DHW, AK, UP, DH, UG, and PF contributed to data acquisition, interpretation, and critical revision of the manuscript. YK, AC, FB, VS, AP, ED, MM, CZ, MDC, MGDP, and GGM contributed to data interpretation and manuscript revision. DV supervised the study and critically revised the manuscript. All authors reviewed and approved the final manuscript.

Corresponding author

Correspondence to David Valcárcel.

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Competing interests

MJM: Received honoraria for consulting and scientific support from Jazz Pharmaceuticals; AA-K: Received honoraria from Celgene-BMS/Novartis/Astex/ALX Oncology/Aprea/Medimmune-AstraZeneca/H3B-Hemavant: research support. Novartis: scientific steering committee membership; AMZ participated in advisory boards, consulted, participated in clinical trial committees, and/or received honoraria from AbbVie, Akesobio, Agios, Amgen, Astellas, BioCryst, Beigene, Boehringer-Ingelheim, Celgene/BMS, Chiesi/Cornerstone biopharma, Daiichi Sankyo, Dr Reddy, Epizyme, Faron, Fibrogen, GSK, Glycomimetics, Genentech, Gilead, Geron, Janssen, Jasper, Karyopharm, Kyowa Kirin, Keros, Kura, Novartis, Notable, Orum, Otsuka, Pfizer, Regeneron, Rigel, Seattle Genetics, Shattuck labs, Schrodinger, Syros, Syndax, Servier, Takeda, Treadwell, Taiho, Vincerx, and Zentalis; DV: participated in advisory boards, consulted, participated in clinical trial committees, and/or received honoraria from AbbVie, Agios, Amgen, Asofarma, Astellas, Celgene/BMS, Grifols, Janssen, Jazz, MSD, Novartis, Pfizer, Sanofy, Servier, Sobi, Syros and Takeda.

Ethics approval and consent to participate

The study was conducted in accordance with the principles of the Declaration of Helsinki. The study protocol was approved by the Clinical Research Ethics Committee of Vall d’Hebron University Hospital (PR(AG)497/2018). All patients provided written informed consent. Additional approvals were obtained from the local ethics committees of participating centers when required.

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Montoro, M.J., Acha, P., Haferlach, C. et al. How should myelodysplastic neoplasms with isolated deletion 5q and TP53 multihit alterations be classified?. Leukemia (2026). https://doi.org/10.1038/s41375-026-02939-w

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