Table 3 Differentially expressed miRNA between salivary gland and breast adenoid cystic carcinoma

From: Adenoid cystic carcinomas of the salivary gland, lacrimal gland, and breast are morphologically and genetically similar but have distinct microRNA expression profiles

Upregulated

Downregulated

miRBase accession

miRBase symbol

FDR

Fold change

Genomic location

Host gene

miRBase accession

miRBase symbol

FDR

Fold change

Genomic location

Host gene

MIMAT0027353

hsa-miR-6726-5p

0.02

1.70

1p36.33

ACAP3

MIMAT0001080

hsa-miR-196b-5pa

<0.001

0.38

7p15.2

Intergenic

MIMAT0017990

hsa-miR-3613-5p

0.012

1.58

13q14.2

Intergenic

MIMAT0003283

hsa-miR-615-3pa

<0.001

0.42

12q13.13

HOXC5

MIMAT0027640

hsa-miR-6870-5p

<0.001

1.54

20p12.2

JAG1

MIMAT0000253

hsa-miR-10a-5p

0.001

0.44

17q21.32

HOXB3

MIMAT0018105

hsa-miR-3679-3p

0.030

1.49

2q21.2

MGAT5

MIMAT0004749

hsa-miR-424-3p

0.012

0.45

Xq26.3

Intergenic

MI0300022574

hsa-mir-6729

0.012

1.47

1p36.22

MIIP

MIMAT0001635

hsa-miR-452-5p

0.002

0.47

Xq28

GABRE

MIMAT0018101

hsa-miR-3677-3p

0.033

1.40

16p13.3

Intergenic

MIMAT0000459

hsa-miR-193a-3p

0.026

0.47

17q11.2

Intergenic

MI0003179

hsa-mir-527

0.016

1.39

19q13.42

Intergenic

MIMAT0009198

hsa-miR-224-3p

0.017

0.49

Xq28

GABRE

MI0006656

hsa-mir-1197

0.002

1.36

15q26.2

Intergenic

MIMAT0000281

hsa-miR-224-5p

<0.001

0.47

Xq28

GABRE

MI0020358

hsa-mir-6081

0.047

1.28

9q22.32

C9orf3

MIMAT0000765

hsa-miR-335-5p

<0.001

0.47

7q32.2

MEST

MI0016772

hsa-mir-4432

0.040

1.27

2p16.1

Intergenic

MIMAT0000254

hsa-miR-10b-5p

0.001

0.48

2q31.1

HOXD4

MI0006375

hsa-mir-548f-2

0.018

1.26

2q34

ERBB4

MIMAT0002874

hsa-miR-503-5p

0.021

0.48

Xq26.3

Intergenic

MI0006339

hsa-mir-1206

0.024

1.26

8q24.21

Intergenic

MIMAT0000083

hsa-miR-26b-5p

0.009

0.50

2q35

CTDSP1

MIMAT0027383

hsa-miR-6741-5p

0.022

1.24

1q42.12

Intergenic

MI0014146

hsa-mir-3128

0.001

0.52

2q312

NFE2L2

MI0003823

hsa-mir-449c

0.038

1.24

5q11.2

CDC20B

MIMAT0015030

hsa-miR-3156-5p

<0.001

0.53

NA

Multiple stemloopsb

MIMAT0027563

hsa-miR-6831-3p

0.043

1.22

5q31.3

APBB3

MIMAT0019068

hsa-miR-4529-3p

<0.001

0.53

18q21.2

TCF4

MI0022589

hsa-mir-6744

0.026

1.20

11p15.5

MUC5B

MIMAT0014991

hsa-miR-3128

0.031

0.53

2q31.2

NFE2L2

MI0016426

hsa-mir-3150b

0.039

1.19

8q22.1

NDUFAF6

MIMAT0004698

hsa-miR-135b-3p

0.018

0.54

1q32.1

LEMD1

MI0005544

hsa-mir-147b

0.038

1.18

15q21.1

C15orf48

MIMAT0018179

hsa-miR-3907

0.016

0.57

7q36.1

CRYGN

MI0016857

hsa-mir-4495

0.041

1.18

12q23.1

Intergenic

MIMAT0000096

hsa-miR-98-5p

0.016

0.60

Xp11.22

HUWE1

MI0017281

hsa-mir-4653

0.039

1.16

7q22.1

AP1S1

MIMAT0019954

hsa-miR-4786-5p

0.011

0.63

2q37.3

Intergenic

MIMAT0023710

hsa-miR-6085

0.001

1.15

15q22.2

Intergenic

MIMAT0004955

hsa-miR-374b-5p

0.004

0.64

Xq13.2

Intergenic

MIMAT0019027

hsa-miR-4492

0.002

1.11

11q23.3

BCL9L

MI0025513

hsa-mir-6516

0.039

0.64

17q25.2

SEC14L1

MIMAT0026622

hsa-miR-619-5p

0.037

1.11

12q24.11

SSH1

MI0025751

hsa-mir-7975

0.002

0.66

19q13.42

Intergenic

MIMAT0030999

hsa-miR-8072

<0.001

1.10

12q24.31

SBNO1

MI0022733

hsa-mir-6886

0.038

0.66

19p13.2

LDLR

MIMAT0005582

hsa-miR-1228-5p

0.005

1.09

12q13.3

LRP1

MIMAT0026636

hsa-miR-668-5p

0.016

0.67

14q32.31

Intergenic

MIMAT0018994

hsa-miR-4467

0.009

1.09

7q22.1

LRWD1

MIMAT0019231

hsa-miR-3944-5p

0.010

0.69

10q26.3

ECHS1

MIMAT0007881

hsa-miR-1908-5p

0.002

1.08

11q12.2

FADS1

MI0000077

hsa-mir-21

0.028

0.69

17q23.1

Intergenic

MIMAT0022946

hsa-miR-1237-5p

0.016

1.06

11q13.1

RPS6KA4

MIMAT0004552

hsa-miR-139-3p

0.045

0.69

11q13.4

PDE2A

MIMAT0023252

hsa-miR-5787

0.017

1.06

3p21.31

GNAI2

MI0000082

hsa-mir-25

0.027

0.71

7q22.1

MCM7

MIMAT0019032

hsa-miR-4497

0.037

1.04

12q24.11

Intergenic

MIMAT0019830

hsa-miR-4717-3p

0.027

0.71

16p13.3

Intergenic

MIMAT0030019

hsa-miR-7704

0.045

1.02

2q31.1

HOXD1

MIMAT0026606

hsa-miR-511-3p

0.002

0.72

10p12.33

MRC1

      

MIMAT0005895

hsa-miR-548f-3p

0.003

0.72

NA

Multiple stemloopsc

      

MI0015849

hsa-mir-4320

0.010

0.72

18q21.1

MYO5B

      

MI0014250

hsa-mir-3201

0.011

0.73

22q13.32

Intergenic

      

MI0017310

hsa-mir-4679-1

0.010

0.74

10q23.31

Intergenic

      

MIMAT0018942

hsa-miR-4427

0.031

0.74

1q42.2

KCNK1

      

MI0003634

hsa-mir-620

0.031

0.74

12q24.21

MED13L

      

MI0015999

hsa-mir-3609

0.009

0.76

7q22.1

TRRAP

      

MI0003628

hsa-mir-615

0.042

0.76

12q13.13

HOXC5

      

MIMAT0015053

hsa-miR-3176

<0.001

0.77

16p13.3

CAPN15

      

MIMAT0018950

hsa-miR-4434

0.011

0.78

2p14

AFTPH

      

MI0003514

hsa-mir-539

0.017

0.78

14q32.31

Intergenic

      

MIMAT0019726

hsa-miR-4659a-5p

0.031

0.78

8p23.1

AGPAT5

      

MIMAT0015018

hsa-miR-3146

0.009

0.79

7p21.1

TWISTNB

      

MIMAT0000226

hsa-miR-196a-5p

<0.001

0.8

NA

Multiple stemloopsd

      

MIMAT0003289

hsa-miR-620

0.010

0.80

12q24.21

MED13L

      

MI0025901

hsa-mir-8065

0.012

0.80

16p13.3

RBFOX1

      

NAe

hsa-miR-3673

0.039

0.80

      

MI0000253

hsa-mir-148a

0.012

0.81

7p15.2

Intergenic

      

MIMAT0025460

hsa-miR-6502-5p

0.031

0.81

12q14.3

IRAK3

      

MI0016800

hsa-mir-4454

0.043

0.81

4q32.2

Intergenic

      

MI0000471

hsa-mir-126

0.043

0.81

9q34.3

EGFL7

      

MIMAT0002172

hsa-miR-376b-3p

0.007

0.82

14q32.31

Intergenic

      

MIMAT0018094

hsa-miR-3671

0.017

0.82

1p31.3

LOC107983962

      

MIMAT0026473

hsa-miR-95-5p

0.040

0.83

4p16.1

ABLIM2

      

MIMAT0031176

hsa-miR-7973

0.047

0.83

15q21.2

CYP19A1

      

MIMAT0019030

hsa-miR-4495

0.047

0.83

12q23.1

Intergenic

      

MIMAT0019745

hsa-miR-4668-5p

0.010

0.84

9q31.3

UGCG

      

MIMAT0017991

hsa-miR-3613-3p

0.012

0.84

13q14.2

Intergenic

      

MI0005775

hsa-mir-297

0.042

0.84

4q25

Intergenic

      

MI0016074e

hsa-mir-3673

0.036

0.85

      

MIMAT0000250

hsa-miR-139-5p

0.024

0.90

11q13.4

PDE2A

  1. aAlso downregulated in lacrimal gland adenoid cystic carcinoma as compared to breast hsa-miR-196b-5p fold change 0.41 (FDR < 0.001) and hsa-miR-615-3p fold change 0.39 (FDR = 0.003)
  2. bhsa-mir-3156-1, hsa-mir-3156-2, and hsa-mir-3156-3
  3. chsa-mir-548f-1, hsa-mir-548f-2, hsa-mir-548f-3, hsa-mir-548f-4, and hsa-mir-548f-5
  4. dhsa-mir-196a-1 and hsa-mir-196a-2
  5. eRemoved from miRBase