Table 2 List of candidate regions and genes selected based on the linkage analysis in each family

From: Identification of ADHD risk genes in extended pedigrees by combining linkage analysis and whole-exome sequencing

   

Gene-set analysis

Family

LR selected

Genes with rare variants in WES

Pself-contained

Pcompetitive

P1

8:118608158–124649389

-----

0.2838

0.4512

9:7754113–15568230

TYRP1, FREM1

9:97466973–102213749

-----

11:115218677–120365028

NXPE1,TMEM25, HYOU1, VPS11, ABCG4, CCDC153

16:63079319–66386711

HSF4

16:81159781–83154022

DYNLRB2, PKD1L2, PLCG2, OSGIN1, MBTPS1

P2

8:118608158–124649389

DEPTOR, ATAD2

0.0066

0.0042

9:7754113–15568230

PTPRD, TYRP1, FREM1

9:97466973–102213749

HSD17B3, AAED1, ANP32Ba, TBC1D2

10:56177098–58789387

PCDH15

10:64668048–65875491

-----

11:21968768–29134515

ANO3

11:115218677–120365028

BUD13, VPS11

13:106701406–109091885

-----

16:63079319–66386711

-----

P3

6:203878–460901

-----

0.1368

0.1393

6:3446942–4470581

-----

9:97466973–102213749

-----

10:14311273–15844850

-----

10:64668048–65875491

-----

11:115218677–120365028

BUD13, TMEM25, VPS11

13:106701406–109091885

-----

16:63079319–66386711

CDH5

16:81159781–83154022

MBTPS1

  1. Genes were included if they were present in the linkage region (LR; ± 1 Mb) with LOD ≥ 2, to which the family was contributing and if they harbored a rare variant (according to our selection criteria).
  2. aNo variants were observed in the ANP32B gene in IMpACT exome-chip data. Gene-set-based association analysis used meta-analytic exome-chip data from 9365 individuals (1846 ADHD patients and 7519 controls [22]).