Table 3 Replication results for genome-wide significant loci identified in the ISGC and MVP meta-analysis.
From: Genome-wide association study meta-analysis of suicide death and suicidal behavior
CHR | SNP | BP | A1 | A2 | FRQ_A_4098 | FRQ_U_247898 | INFO | OR | SE | p | Nearest gene (distance to index SNP in kb) |
|---|---|---|---|---|---|---|---|---|---|---|---|
1 | rs3791129 | 44,480,093 | A | G | 0.7582 | 0.7503 | 0.99 | 1.06 | 0.03 | 0.041 | SLC6A9 (0.0) |
1 | rs2503185 | 66,461,401 | G | A | 0.4231 | 0.4347 | 1 | 0.96 | 0.02 | 0.078 | PDE4B (0.0) |
11 | rs7131627 | 113,299,829 | A | G | 0.4986 | 0.5107 | 1 | 0.96 | 0.02 | 0.075 | DRD2 (0.0) |
12 | rs17485141 | 24,213,634 | T | C | 0.2325 | 0.248 | 1 | 0.92 | 0.03 | 0.003 | SOX5 (0.0) |
13 | rs9525171 | 96,908,223 | G | C | 0.4996 | 0.5072 | 1 | 0.97 | 0.02 | 0.259 | HS6ST3 (0.0) |
14 | rs850261 | 57,346,423 | G | A | 0.4344 | 0.4274 | 1 | 1.04 | 0.02 | 0.114 | OTX2-AS1 (0.0) |
15 | rs17514846 | 91,416,550 | A | C | 0.3905 | 0.3936 | 1 | 0.99 | 0.02 | 0.59 | FURIN (0.0) |
22 | rs2284000 | 37,053,338 | G | C | 0.2922 | 0.2902 | 0.99 | 1 | 0.03 | 0.853 | CACNG2 (0.0) |
3 | rs7649709 | 173,129,819 | A | C | 0.3291 | 0.3269 | 0.96 | 1 | 0.02 | 0.965 | NLGN1 (0.0) |
6 | rs62404522 | 19,307,114 | C | T | 0.1416 | 0.1301 | 1 | 1.12 | 0.03 | 0.001 | LOC101928519 (–76.4) |
6 | rs35869525 | 26,946,687 | T | C | 0.04866 | 0.05079 | 1 | 0.98 | 0.05 | 0.642 | MHC |
7 | rs62474683 | 115,020,725 | G | A | 0.4203 | 0.4283 | 1 | 0.97 | 0.02 | 0.172 | LINC01392 (–149.3) |
