Table 7 Three Biological Processes induced by different treatments with ECs.

From: Extracellular condensates (ECs) are endogenous modulators of HIV transcription and latency reactivation

Group

Top 5 Canonical Pathways

Name

p-value range

VEH ECs

RNA Pol III Transcription

1.25E-04

Assembly of RNA Pol III Complex

6.19E-03

mRNA Capping

1.19E-02

Nucleotide Excision Repair Pathway

1.44E-02

Nucleosome assembly

2.01E-02

VEH | SIV ECs

Metabolism of vitamin K

5.29E-03

PI Metabolism

9.47E-03

Xanthine and Xanthosine Salvage

1.06E-02

Cell Cycle Checkpoints

1.50E-02

Guanine and Guanosine Salvage

1.58E-02

THC | SIV ECs

PI Metabolism

2.49E-03

Mitotic Roles of Polo-Like Kinase

7.25E-03

Cilium Assembly

8.51E-03

NAD Phosphorylation and Dephosphorylation

9.32E-03

Gamma carboxylation, hypusine formation and arylsulfatase activation

1.14E-02

 

Top 5 Diseases and Biological Functions

VEH ECs

Name

p-value range

Connective Tissue Disorders

4.14E-04 - 4.14E-04

Developmental Disorder

4.14E-04 - 4.14E-04

Hereditary Disorder

2.21E-02 - 4.14E-04

Organismal Injury and Abnormalities

4.80E-02 - 4.14E-04

Skeletal and Muscular Disorders

2.13E-02 - 4.14E-04

VEH |  SIV ECs

Neurological Disease

4.92E-02 - 5.77E-07

Organismal Injury and Abnormalities

4.92E-02 - 5.77E-07

Cancer

4.92E-02 - 3.41E-06

Dermatological Diseases and Conditions

4.67E-02 - 5.75E-04

Gastrointestinal Disease

4.67E-02 - 9.10E-04

THC | SIV ECs

Cancer

4.49E-02 - 7.36E-17

Organismal Injury and Abnormalities

4.49E-02 - 7.36E-17

Gastrointestinal Disease

4.27E-02 - 1.10E-13

Endocrine System Disorders

4.42E-02 - 4.83E-10

Neurological Disease

4.49E-02 - 1.14E-07

 

Top 5 Molecular and Cellular Functions

 

Name

p-value range

VEH ECs

Cell Death and Survival

3.54E-02 - 4.14E-04

 

Cellular Assembly & Organization

2.74E-02 - 4.14E-04

 

DNA Replication, Recombination, Repair

2.13E-02 - 4.14E-04

 

Small Molecule Biochemistry

2.13E-02 - 8.27E-04

 

Cell Cycle

2.74E-02 - 1.24E-03

VEH | SIV ECs

Cell Death and Survival

4.25E-02 - 5.77E-07

 

Cell Morphology

4.67E-02 - 5.77E-07

 

Cellular Compromise

3.13E-02 - 5.77E-07

 

Cellular Assembly and Organization

4.67E-02 - 1.77E-03

 

Cellular Function and Maintenance

4.67E-02 - 1.77E-03

THC | SIV ECs

Cell Morphology

4.49E-02 - 1.30E-04

 

Cell Death and Survival

4.49E-02 - 6.51E-04

 

Cellular Assembly and Organization

4.49E-02 - 1.10E-03

 

Cellular Function and Maintenance

4.49E-02 - 1.10E-03

 

Carbohydrate Metabolism

4.49E-02 - 1.89E-03