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LncRNA KTN1-AS1 promotes the progression of non-small cell lung cancer via sponging of miR-130a-5p and activation of PDPK1

Abstract

Non-small cell lung cancer (NSCLC) is the major cause of cancer-associated death worldwide, but its underlying mechanisms remain to be fully elucidated. Long noncoding RNAs (lncRNAs) are known to play an important role in the aberrant regulation of gene expression in many cancers, including NSCLC. Here, we investigated the involvement of the lncRNA KTN1-AS1 in NSCLC. We found that KTN1-AS1 expression was upregulated in NSCLC tissue and was positively associated with poor prognosis. KTN1-AS1 knockdown inhibited cell growth and proliferation, increased apoptosis, and modulated the expression of cell cycle- and apoptosis-related proteins (cyclin A1, cyclin-dependent kinase 2, Bcl2, and Bax) in NSCLC cell lines and tumour xenografts in nude mice. KTN1-AS1 bound to and directly regulated the expression of miR-130a-5p. Notably, miR-130a-5p overexpression suppressed NSCLC cell proliferation and increased apoptosis in vitro and in vivo, and this effect was reversed by KTN1-AS1 overexpression. Finally, we showed that KTN1-AS1 modulated the expression of 3-phosphoinositide-dependent protein kinase 1 (PDPK1), a miR-130a-5p target and key regulator of autophagy in NSCLC cells. Taken together, our results suggest that the KTN1-AS1/miR-130a-5p/PDPK1 pathway may be a potential therapeutic target for NSCLC.

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Fig. 1: KTN1-AS1 expression is upregulated in NSCLC tissues and is associated with poor prognosis.
Fig. 2: Knockdown of KTN1-AS1 suppresses NSCLC cell proliferation and increases apoptosis in vitro.
Fig. 3: Knockdown of KTN1-AS1 suppresses NSCLC tumour growth in vivo.
Fig. 4: KTN1-AS1 and miR-130a-5p are reciprocally regulated in NSCLC cells.
Fig. 5: miR-130a-5p overexpression attenuates the oncogenic activity of KTN1-AS1.
Fig. 6: Overexpression of miR-130a-5p suppresses NSCLC tumour growth in vivo.
Fig. 7: PDPK1 mRNA is a miR-130a-5p target and is cooperatively regulated by miR-130a-5p and KTN1-AS1.
Fig. 8: Knockdown of PDPK1 abolishes the effects of anti-miR-130a-5p in NSCLC cells in vitro.
Fig. 9: KTN1-AS1, miR-130a-5p, and PDPK1 signalling regulates autophagy in NSCLC cells.

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References

  1. Chen W, Zheng R, Baade PD, Zhang S, Zeng H, Bray F, et al. Cancer statistics in China, 2015. CA Cancer J Clin. 2016;66:115–32.

    Article  Google Scholar 

  2. Siegel RL, Miller KD, Jemal A. Cancer statistics, 2017. CA: Cancer J Clin. 2017;67:7–30.

    Google Scholar 

  3. Boolell V, Alamgeer M, Watkins DN, Ganju V. The evolution of therapies in non-small cell lung cancer. Cancers. 2015;7:1815–46.

    Article  CAS  Google Scholar 

  4. Wood SL, Pernemalm M, Crosbie PA, Whetton AD. Molecular histology of lung cancer: from targets to treatments. Cancer Treat Rev. 2015;41:361–75.

    Article  CAS  Google Scholar 

  5. Bautista RR, Gomez AO, Miranda AH, Dehesa AZ, Villarreal-Garza C, Avila-Moreno F, et al. Correction to: Long non-coding RNAs: implications in targeted diagnoses, prognosis, and improved therapeutic strategies in human non- and triple-negative breast cancer. Clin Epigenet. 2018;10:106.

    Article  Google Scholar 

  6. Chang ZW, Jia YX, Zhang WJ, Song LJ, Gao M, Li MJ, et al. LncRNA-TUSC7/miR-224 affected chemotherapy resistance of esophageal squamous cell carcinoma by competitively regulating DESC1. J Exp Clin Cancer Res. 2018;37:56.

    Article  Google Scholar 

  7. Fatica A, Bozzoni I. Long non-coding RNAs: new players in cell differentiation and development. Nat Rev Genet. 2014;15:7–21.

    Article  CAS  Google Scholar 

  8. Gong Z, Zhang S, Zeng Z, Wu H, Yang Q, Xiong F, et al. LOC401317, a p53-regulated long non-coding RNA, inhibits cell proliferation and induces apoptosis in the nasopharyngeal carcinoma cell line HNE2. PLoS ONE. 2014;9:e110674.

    Article  Google Scholar 

  9. Zhao W, An Y, Liang Y, Xie XW. Role of HOTAIR long noncoding RNA in metastatic progression of lung cancer. Eur Rev Med Pharmacol Sci. 2014;18:1930–6.

    CAS  PubMed  Google Scholar 

  10. Lu KH, Li W, Liu XH, Sun M, Zhang ML, Wu WQ, et al. Long non-coding RNA MEG3 inhibits NSCLC cells proliferation and induces apoptosis by affecting p53 expression. BMC Cancer. 2013;13:461.

    Article  Google Scholar 

  11. Gutschner T, Hammerle M, Eissmann M, Hsu J, Kim Y, Hung G, et al. The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Res. 2013;73:1180–9.

    Article  CAS  Google Scholar 

  12. Chen Z, Li JL, Lin S, Cao C, Gimbrone NT, Yang R, et al. cAMP/CREB-regulated LINC00473 marks LKB1-inactivated lung cancer and mediates tumor growth. J Clin Investig. 2016;126:2267–79.

    Article  Google Scholar 

  13. Deng J, Liang Y, Liu C, He S, Wang S. The up-regulation of long non-coding RNA AFAP1-AS1 is associated with the poor prognosis of NSCLC patients. Biomed Pharmacother. 2015;75:8–11.

    Article  CAS  Google Scholar 

  14. Yin D, Lu X, Su J, He X, De W, Yang J, et al. Long noncoding RNA AFAP1-AS1 predicts a poor prognosis and regulates non-small cell lung cancer cell proliferation by epigenetically repressing p21 expression. Mol Cancer. 2018;17:92.

    Article  Google Scholar 

  15. Lv J, Qiu M, Xia W, Liu C, Xu Y, Wang J, et al. High expression of long non-coding RNA SBF2-AS1 promotes proliferation in non-small cell lung cancer. J Exp Clin Cancer Res. 2016;35:75.

    Article  Google Scholar 

  16. Cao W, Liu JN, Liu Z, Wang X, Han ZG, Ji T, et al. A three-lncRNA signature derived from the Atlas of ncRNA in cancer (TANRIC) database predicts the survival of patients with head and neck squamous cell carcinoma. Oral Oncol. 2017;65:94–101.

    Article  CAS  Google Scholar 

  17. Kim T, Jeon YJ, Cui R, Lee JH, Peng Y, Kim SH, et al. Role of MYC-regulated long noncoding RNAs in cell cycle regulation and tumorigenesis. J Natl Cancer Inst. 2015;107:1–11.

  18. Zhang L, Wang L, Wang Y, Chen T, Liu R, Yang W, et al. LncRNA KTN1-AS1 promotes tumor growth of hepatocellular carcinoma by targeting miR-23c/ERBB2IP axis. Biomed Pharmacother. 2019;109:1140–7.

    Article  CAS  Google Scholar 

  19. Xian X, Tang L, Wu C, Huang L. miR-23b-3p and miR-130a-5p affect cell growth, migration and invasion by targeting CB1R via the Wnt/beta-catenin signaling pathway in gastric carcinoma. OncoTargets Ther. 2018;11:7503–12.

    Article  CAS  Google Scholar 

  20. Xu CH, Xiao LM, Liu Y, Chen LK, Zheng SY, Zeng EM, et al. The lncRNA HOXA11-AS promotes glioma cell growth and metastasis by targeting miR-130a-5p/HMGB2. Eur Rev Med Pharmacol Sci. 2019;23:241–52.

    PubMed  Google Scholar 

  21. Han J, Goldstein LA, Hou W, Chatterjee S, Burns TF, Rabinowich H. HSP90 inhibition targets autophagy and induces a CASP9-dependent resistance mechanism in NSCLC. Autophagy. 2018;14:958–71.

    CAS  PubMed  PubMed Central  Google Scholar 

  22. Shen W, Zhang X, Fu X, Fan J, Luan J, Cao Z, et al. A novel and promising therapeutic approach for NSCLC: recombinant human arginase alone or combined with autophagy inhibitor. Cell Death Dis. 2017;8:e2720.

    Article  Google Scholar 

  23. Zhang L, Lei Y, Zhang Y, Li Y, Bu Y, Song F, et al. Silencing of PRR11 suppresses cell proliferation and induces autophagy in NSCLC cells. Genes Dis. 2018;5:158–66.

    Article  CAS  Google Scholar 

  24. Huarte M. LncRNAs have a say in protein translation. Cell Res. 2013;23:449–51.

    Article  CAS  Google Scholar 

  25. Rinn JL, Chang HY. Genome regulation by long noncoding RNAs. Annu Rev Biochem. 2012;81:145–66.

    Article  CAS  Google Scholar 

  26. Ulitsky I, Bartel DP. lincRNAs: genomics, evolution, and mechanisms. Cell. 2013;154:26–46.

    Article  CAS  Google Scholar 

  27. Wang Y, Hou J, He D, Sun M, Zhang P, Yu Y, et al. The emerging function and mechanism of ceRNAs in cancer. Trends Genet. 2016;32:211–24.

    Article  Google Scholar 

  28. Tang Q, Zheng F, Liu Z, Wu J, Chai X, He C, et al. Novel reciprocal interaction of lncRNA HOTAIR and miR-214-3p contribute to the solamargine-inhibited PDPK1 gene expression in human lung cancer. J Cell Mol Med. 2019;23:7749–61.

    Article  CAS  Google Scholar 

  29. Behan FM, Iorio F, Picco G, Goncalves E, Beaver CM, Migliardi G, et al. Prioritization of cancer therapeutic targets using CRISPR-Cas9 screens. Nature. 2019;568:511–6.

    Article  CAS  Google Scholar 

  30. Chang CW, Chen YS, Tsay YG, Han CL, Chen YJ, Yang CC, et al. ROS-independent ER stress-mediated NRF2 activation promotes warburg effect to maintain stemness-associated properties of cancer-initiating cells. Cell Death Dis. 2018;9:194.

    Article  Google Scholar 

  31. Li Y, Yang C, Zhang L, Yang P. MicroRNA-210 induces endothelial cell apoptosis by directly targeting PDK1 in the setting of atherosclerosis. Cell Mol Biol Lett. 2017;22:3.

    Article  Google Scholar 

  32. Zheng N, Ding X, Sun A, Jahan R. PDK1 activity regulates proliferation, invasion and growth of hemangiomas. Cell Physiol Biochem. 2015;36:1903–10.

    Article  CAS  Google Scholar 

  33. Li Y, Jiang J, Liu W, Wang H, Zhao L, Liu S, et al. microRNA-378 promotes autophagy and inhibits apoptosis in skeletal muscle. Proc Natl Acad Sci USA. 2018;115:E10849–E10858.

    Article  CAS  Google Scholar 

  34. McManus S, Bisson M, Chamberland R, Roy M, Nazari S, Roux S. Autophagy and 3-phosphoinositide-dependent kinase 1 (PDK1)-related kinome in pagetic osteoclasts. J Bone Miner Res. 2016;31:1334–43.

    Article  CAS  Google Scholar 

  35. Wang F, Shan S, Huo Y, Xie Z, Fang Y, Qi Z, et al. MiR-155-5p inhibits PDK1 and promotes autophagy via the mTOR pathway in cervical cancer. Int J Biochem Cell Biol. 2018;99:91–9.

    Article  CAS  Google Scholar 

  36. Zhou LK, Xu L, Ye J, Li D, Wang WS, Li XH, et al. Cidea promotes hepatic steatosis by sensing dietary fatty acids. Hepatology. 2012;56:95–107.

    Article  CAS  Google Scholar 

  37. Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, et al. NCBI GEO: archive for functional genomics data sets-update. Nucleic Acids Res. 2013;41:D991–995.

    Article  CAS  Google Scholar 

  38. Carrot-Zhang J, Chambwe N, Damrauer JS, Knijnenburg TA, Robertson AG, Yau C. et al. Comprehensive analysis of genetic ancestry and its molecular correlates in cancer. Cancer Cell. 2020;37:639–654.e636.

    Article  CAS  Google Scholar 

  39. Tang Z, Li C, Kang B, Gao G, Li C, Zhang Z. GEPIA: a web server for cancer and normal gene expression profiling and interactive analyses. Nucleic Acids Res. 2017;45:W98–W102.

    Article  CAS  Google Scholar 

  40. Dan C, Jinjun B, Zi-Chun H, Lin M, Wei C, Xu Z, et al. Modulation of TNF-alpha mRNA stability by human antigen R and miR181s in sepsis-induced immunoparalysis. EMBO Mol Med. 2015;7:140–57.

    Article  CAS  Google Scholar 

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Acknowledgements

We thank Anne M. O’Rourke, Ph.D., from Liwen Bianji, Edanz Group China (www.liwenbianji.cn/ac), for editing the English text of a draft of this manuscript. The results shown here are in whole or part based upon data generated by the TCGA Research Network: https://www.cancer.gov/tcga.

Funding

This work was supported by the National Natural Science Foundation of China (81602636), General Program of Jiangsu Cancer Hospital (ZM201809), Jiangsu Provincial Medical Youth Talent (QNRC2016645), Young Talents Program of Jiangsu Cancer Hospital(QL201814), Nanjing Medical Science and Technology Development Project (ZKX15049), Key Project of Science of Sichuan Education Department (18ZA0164) and Natural Science Foundation of Chengdu Medical College (CYZ18-04).

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Correspondence to Jifeng Feng or Jianwei Lu.

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Li, C., Zhao, W., Pan, X. et al. LncRNA KTN1-AS1 promotes the progression of non-small cell lung cancer via sponging of miR-130a-5p and activation of PDPK1. Oncogene 39, 6157–6171 (2020). https://doi.org/10.1038/s41388-020-01427-4

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