Table 1 Overcoming Challenges and Shaping Future Directions in Neuroblastoma.

From: Dissecting neuroblastoma heterogeneity through single-cell multi-omics: insights into development, immunity, and therapeutic resistance

Research aspect

Key challenges

Potential solutions

Technical limitations

Loss of cell viability, sample contamination, and high sequencing cost

Optimize tissue handling and cell preservation techniques; employ microdissection-based enrichment and low-input sequencing strategies

Data reliability

Insufficient sequencing depth and high intercellular variability

Increase sequencing depth; integrate temporal and spatial multi-omics data to improve normalization and consistency

Tumor heterogeneity

Complex microenvironmental and intercellular diversity

Develop cross-layer multi-omics frameworks to capture tumor–microenvironment interactions

Multi-omics integration

Limited application beyond scRNA-seq

Expand multi-omics coverage and develop hierarchical data integration algorithms

Computational resources

High computational demand and limited scalability of algorithms

Incorporate AI/ML-assisted high-throughput computing platforms and construct interpretable analytical frameworks

Translational validation

Lack of robust clinical cohorts and functional validation experiments

Establish longitudinal clinical cohorts integrating spatial omics and experimental models for mechanistic validation