Table 2 PTM resource database
From: Targeting protein modifications in metabolic diseases: molecular mechanisms and targeted therapies
No. | Short Name | DB Name | URLs |
|---|---|---|---|
1 | dbPTM | A database for exploring regulatory networks and functional associations of protein posttranslational modifications | |
2 | PTMcode v2 | A resource for functional associations of posttranslational modifications within and between proteins | |
3 | PTM-SD | A database of structurally resolved and annotated posttranslational modifications in proteins | |
4 | FAT-PTM | The Functional Analysis Tools for Posttranslational Modifications (FAT-PTM) database: a PTM database for analysis of proteins and metabolic pathways | |
5 | PTMD | A Database of Human Disease-associated Posttranslational Modifications | |
6 | DEPOD | The Human DEPhOsphorylation Database | |
7 | iPTMnet | An integrated resource for protein post-translational modification network discovery | |
8 | PhosPhAt 4.0 | The Arabidopsis Protein Phosphorylation Site Database: an updated arabidopsis database for searching phosphorylation sites and kinase-target interactions | |
9 | Phospho.ELM | A database of phosphorylation sites | |
10 | PhosphoGrid | A database of experimentally verified in vivo protein phosphorylation sites from the budding yeast saccharomyces cerevisiae | |
11 | PhosphoSitePlus | A knowledgebase dedicated to mammalian post-translational modifications (PTMs) | |
12 | UniCarbKB | A new database features for integrating glycan structure abundance, compositional glycoproteomics data, and disease associations | |
13 | VPTMdb | A viral posttranslational modification database | |
14 | AWESOME | A database of SNPs that affect protein posttranslational modifications | |
15 | PTM-Switchboard | A database of posttranslational modifications of transcription factors, the mediating enzymes and target genes | |
16 | PTM-Shepherd | Analysis and Summarization of PostTranslational and Chemical Modifications From Open Search Results | |
17 | iProteinDB | An Integrative Database of Drosophila Post-translational Modifications | |
18 | PRISMOID | A comprehensive 3D structure database for posttranslational modifications and mutations with functional impact | |
19 | dbGSH | A database of S-glutathionylation | |
20 | qPTMplants | An integrative database of quantitative posttranslational modifications in plants | |
21 | novPTmenzy | A database for enzymes involved in novel posttranslational modifications | |
22 | SysPTM 2.0 | An updated systematic resource for posttranslational modification | |
23 | PHOSIDA | A posttranslational modification database | |
24 | BioGRID | A comprehensive biomedical resource of curated protein, genetic, and chemical interactions | |
25 | qPhos | A database of protein phosphorylation dynamics in humans | |
26 | EPSD | Eukaryotic Phosphorylation Site Database: a well-annotated data resource of protein phosphorylation sites in eukaryotes | |
27 | CPLM 4.0 | An updated database with rich annotations for protein lysine modifications | |
28 | YAAM | Yeast Amino Acid Modifications Database | |
29 | HPRD | Human Protein Reference Database | |
30 | Phospho3D 2.0 | An enhanced database of three-dimensional structures of phosphorylation sites | |
31 | LymPHOS 2.0 | An update of a phosphosite database of primary human T cells | |
32 | P3DB 3.0 | From plant phosphorylation sites to protein networks | |
33 | UniPep | A database for human N-linked glycosites: a resource for biomarker discovery | |
34 | GlycoFish | A database of zebrafish N-linked glycoproteins identified using SPEG method coupled with LC/MS | |
35 | mUbiSiDa | A comprehensive database for protein ubiquitination sites in mammals | |
36 | SwissPalm | A database on protein S-palmitoylation |
