Table 1 Overview of genomic statistics of Thermoprofundales MAGs

From: Genomic and transcriptomic insights into the ecology and metabolism of benthic archaeal cosmopolitan, Thermoprofundales (MBG-D archaea)

SAG/MAG

M8B2D

M9B1D

M9B2D

M11B2D

3300003432D

SG8-52-3

SG8-52-4

SM1-50

SCGC AB-539-N05

SCGC AB-539-C06

SCGC AB-540-F20

Copies of individual markers

 0

14

33

29

48

29

23

34

11

74

130

103

 1

122

154

152

130

154

162

143

173

108

53

46

 2

13

1

6

10

4

3

9

4

6

5

0

 3

0

0

1

0

1

0

2

0

0

0

0

 4

0

0

0

0

0

0

0

0

0

0

0

 5+

0

0

0

0

0

0

0

0

0

0

0

Completeness (%)

88.79

81.55

89.34

77.78

79.6

85.2

77.2

94.74

51.42

21.46

35.51

Contamination (%)

7.32

0.8

5.6

7.8

4.8

2.4

7.6

2.4

1.81

1.64

0

Strain heterogeneity (%)

0

0

0

0

0

0

6.67

0

83.33

20

0

Genome size (bp)

2,555,641

1,692,085

2,781,214

1,712,033

2,023,941

1,909,404

2,246,271

2,091,705

801,028

593,453

1,037,251

Estimated genome size (bp)

2,878,298

2,074,905

3,113,067

2,201,122

2,542,639

2,241,085

2,909,677

2,207,837

1,557,814

2,765,391

2,921,011

N50 (bp)

7232

6825

14,196

5506

29,868

30,406

31,397

33,816

27,065

10,367

12,904

Longest scaffold (bp)

35,826

55,446

64,248

21,103

148,374

131,306

104,598

111,154

73332

48190

77,009

Scaffold number

458

298

350

356

135

84

91

94

99

104

172

Mean scaffold length (bp)

5580.00

5678.14

7946.33

4809.08

14,992.16

22,731.00

24,684.30

22,252.18

8091.19

5706.28

6030.53

GC (%)

32.2

31.4

42.3

43.6

43.2

30.4

31.6

39.0

36.5

35.0

35.6

GC standard deviation (%)

3.1

2.4

2.5

2.5

1.9

1.8

2.3

2.8

2.7

2.9

2.9

Coding density (%)

86.1

88.8

88.9

90.4

88.3

91.0

90.7

85.3

90.7

83.3

85.7

  1. The first four MAGs were reconstructed from metagenomic DNA from Mai Po wetland sediments. 3300003432D was binned from the metagenomic sequencing deposit (IMG: 3300003432, surface sediment sample from Twitchell Island in the Sacramento Delta). SG8-52-3, SG8-52-4, and SM1-50 were originated from ref. [14], binned from sulfate-reducing zone (the former two MAGs) and sulfate-methane transition zone (the last MAG) of sediment profile from White Oak River estuary, North Carolina. The last three SAGs were originated from ref. [5], and the cells are sorted from 10-cm depth organic-rich marine sediments, Aarhus Bay, Denmark. The genomic property data of SAGs and MAGs were calculated by CheckM. Because of the low completeness of the three SAGs, only eight MAGs are included in the downstream genomic analysis
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