Table 1 Neutrality index (NI) for the symbiont core genomes

From: Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated

a

 

SOX

MOX

 

Divergent

Polymorphic

Divergent

Polymorphic

Nonsynonymous SNVs

5004

990

2115

704

Synonymous SNVs

10,577

1450

1313

515

Nonsynonymous SNVs/synonymous SNVs

0.47

0.68

1.61

1.37

NI

1.44

0.85

b

 

SOX

MOX

 

Divergent

Polymorphic

Divergent

Polymorphic

Nonsynonymous SNVs

2549

3455

1041

1778

Synonymous SNVs

6370

5657

649

1179

Nonsynonymous SNVs/synonymous SNVs

0.40

0.61

1.60

1.51

NI

1.52

0.94

  1. a, divergent SNVs are all those SNVs that differ between at least two strains, i.e., all identified strains are considered as diverged taxonomic units, and polymorphic SNVs are all the invariant SNVs. b, Divergent SNVs have the same state inside a strain clade and are not invariant and polymorphic SNVs are all the remaining, i.e., only the clades are considered as diverged taxonomic units
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