Fig. 5: Phylogenomic placement and abundance of reconstructed genomes.
From: Fine-scale metabolic discontinuity in a stratified prokaryote microbiome of a Red Sea deep halocline
Maximum-likelihood trees of a Anammox and b thaumarchaeal genomes. Reconstructed MAGs are indicated in bold. White arrows show the root in each tree using Rhodopirellula baltica (BXX119912) and Pyrococcus furiosus DSM 3638 (AE009950) as outgroups, respectively. For brevity, the “Candidatus” epithet is shown in parenthesis. c Highlights the abundance of reconstructed MAGs along the halocline based on the average genome coverage metric (mapping rate) against 11 metagenomes (40–150 PSU), and the abundance of the amoA and hszA genes copies normalized by cell number and measured by quantitative real-time PCR.
