Table 1 SNP annotation summaries based upon comparisons with reference strains Xp2010, Xp17-12, and 91-118 for core gene clusters 2, 3, and 4 and 5, respectively.
Nonsynonymous | ||||||||
|---|---|---|---|---|---|---|---|---|
Cluster | Number of strains | Total | Intragenic | Synonymous | Missense | Nonsense | Nonstop | |
2 | 128 | Average | 95 | 56 | 55 | 27 | 0 | 0 |
Minimum | 14 | 12 | 3 | 7 | 0 | 0 | ||
Maximum | 674 | 182 | 488 | 119 | 2 | 0 | ||
3 | 58 | Average | 127 | 126 | 86 | 26 | 1 | 0 |
Minimum | 94 | 93 | 61 | 18 | 0 | 0 | ||
Maximum | 359 | 358 | 266 | 59 | 3 | 0 | ||
4 | 39 | Average | 1486 | 1439 | 543 | 676 | 19 | 2 |
Minimum | 1400 | 1353 | 524 | 635 | 18 | 1 | ||
Maximum | 1526 | 1482 | 554 | 697 | 21 | 2 | ||
5 | 28 | Average | 1291 | 1248 | 508 | 580 | 20 | 6 |
Minimum | 1166 | 1128 | 457 | 521 | 18 | 6 | ||
Maximum | 1339 | 1296 | 524 | 602 | 22 | 6 | ||
