Table 1 Genome-wide average nucleotide identities among the strains utilized in this study.

From: Experimental evaluation of ecological principles to understand and modulate the outcome of bacterial strain competition in gut microbiomes

Genome1 Name

Genome2 Name

ANI1- > 2

ANI2- > 1

AF1- > 2

AF2- > 1

Bacteroides vulgatus ATCC 8482

Bacteroides vulgatus RJ2H1

98.7

98.7

75.6

75.6

Bacteroides vulgatus ATCC 8482

Akkermansia muciniphila YL44

65.5

65.7

1.0

1.9

Akkermansia muciniphila ATCC BAA-835

Akkermansia muciniphila YL44

99.1

99.1

93.4

90.7

Akkermansia muciniphila ATCC BAA-835

Bacteroides vulgatus RJ2H1

65.7

65.7

2.0

1.1

  1. Average nucleotide identity (ANI) and Alignment Fraction (AF) are measuring genetic relatedness. ANI1 and AF1 are calculated with Genome 1 as the reference. ANI2 and AF2 are calculated with Genome 2 as the reference.
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