Table 1 Genes mapping to COG terms that are significantly less prevalent in auxotrophs vs. prototrophs.
From: Metabolic adaptation to vitamin auxotrophy by leaf-associated bacteria
Function | COG | Present (%) | Strains | Vitamin | q value | ||
|---|---|---|---|---|---|---|---|
Auxotrophs | Prototrophs | Auxotrophs | Prototrophs | ||||
Dethiobiotin synthetase BioD | COG0132 | 0 | 76 | 18 | 17 | Biotin | 7.13e−4 |
Biotin synthase BioB | COG0502 | 22 | 76 | 18 | 17 | Biotin | 8.65e−2 |
Aspartate oxidase NadA | COG0379 | 0 | 83 | 5 | 30 | Niacin/NAD | 5.73e−2 |
Quinolinate synthase NadB | COG0029 | 0 | 87 | 5 | 30 | Niacin/NAD | 3.68e−2 |
Nicotinate-nucleotide pyrophosphorylase NadC | COG0157 | 0 | 87 | 5 | 30 | Niacin/NAD | 3.68e−2 |
Pantothenate synthetase PanC | COG0414 | 10 | 84 | 10 | 25 | Pantothenate/CoA | 1.66e−2 |
Ketopantoate hydroxmethyltransferase PanB | COG0413 | 10 | 84 | 10 | 25 | Pantothenate/CoA | 1.66e−2 |
Thiazole synthase ThiG | COG2022 | 14 | 100 | 14 | 21 | Thiamine/TPP | 1.26e−5 |
Thiamine biosynthesis protein ThiC | COG0422 | 7 | 100 | 14 | 21 | Thiamine/TPP | 1.26e−5 |
