Fig. 4: Gene expression for ribosomal proteins in M. tundripaludum SV96T.
From: Thermal acclimation of methanotrophs from the genus Methylobacter
Heatmaps indicate changes in the relative abundance of transcripts in the transcriptomes at 8, 15, 21, and 27 °C. The color scale reflects z-score normalized relative abundances, with black being lowest relative abundance, followed by gray, yellow, orange, and red, corresponding to increasing relative abundances. Significant differences (p < 0.05) in transcript relative abundances are displayed in square plots to the right of each heatmap, purple indicating significant difference between 15 °C and 8, 21 and 27 °C, respectively, when moving from left to right. Orange indicates significant differences between 8 °C and 21 and 27 °C. Dark blue indicates significant differences between 21 and 27 °C. All p values were estimated with a Wald test, implemented in DESeq2, and corrected for multiple testing using Benjamini Hochberg correction which adjusts for the false discovery rate. Ribosomal proteins that are colored purple in the visualization of the ribosomal proteins on the right of the heatmaps indicate that the genes encoding these proteins are significantly higher expressed at 15 °C than at two or three of the other temperatures. The ribosomal protein overview is modified from [74]. All adjusted p values, normalized counts, genome IDs (a unique identifier that allows tracking of each gene to the genome annotation available in https://mage.genoscope.cns.fr/microscope) and full protein names are given in SD C: Table C4. Rpl and rpm: large ribosomal subunit proteins; rps: small ribosomal subunit proteins. The ribosome cartoon is partly based on previous illustrations [42]. Numbers next to heatmaps refer to corresponding genes in SD C: Table C4.
