Table 2 Structural search for missing AMO subunits in N. viennensis.

From: Unexpected complexity of the ammonia monooxygenase in archaea

Gene Expression & Structural Search

Previous Analyses

Protein

Gene

TPM log2a

TMb

AOA Conservationc

BN-PAGE Corr.d

AMO Syntenye

NVIE_013530

13.82

1

 

X

 

protein of unknown function

NVIE_004540

13.55

1

X

X

X

hypothetical protein

NVIE_004550

13.39

1

X

X

X

hypothetical protein

 amoX

12.14

2

X

X

X

putative ammonia monooxygenase - associated protein

 coxB

11.87

1

 

X

 

putative heme-copper oxidase subunit II

NVIE_014370

11.75

1

   

putative Copper binding protein, plastocyanin/azurin family

NVIE_010490

11.75

1

   

putative phosphoesterase, DHHA1

NVIE_027520

11.40

1

X

  

putative heme/copper-type cytochrome/quinol oxidase, subunit

NVIE_027550

11.33

1

X

  

putative blue (Type 1) copper domain protein

 atpK

11.30

2

   

archaeal A1A0-type ATP synthase, subunit K

NVIE_021780

10.90

1

   

exported protein of unknown function

NVIE_006540

10.90

1

   

exported protein of unknown function

NVIE_029580

10.20

1

X

  

blue (Type 1) copper domain-containing protein

  1. aBased on transcriptomic counts averaged from replete copper conditions from Reyes et al. (2020) [54].
  2. bNumber of predicted transmembrane helices.
  3. cAs predicted from Abby et al. (2020) [46].
  4. dRepresents proteins correlated with AmoA, AmoB, and AmoC6 in BN-PAGE bands from N. viennensis in this study.
  5. eGenes syntenic with amoA, amoB, and amoC based on the syntenic analysis from this study.
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