Table 3 Differential composition and cell type enrichment by using two different deconvolution approaches.
(a) CIBERSORT differential cell composition | (b) xCell differential cell composition | ||||||
|---|---|---|---|---|---|---|---|
Cell types | logFC enrich | P Value | FDR | Cell types | logFC enrich | P Value | FDR |
NK.cells.resting | −0.0215673 | 3.66e−04 | 8.05e−03 | NK cells | −0.0030001 | 7.45e−03 | 6.81e−02 |
Neutrophils | 0.0340265 | 1.11e−02 | 1.22e−01 | Tgd cells | −0.0008546 | 9.08e−03 | 6.81e−02 |
B.cells.naïve | 0.0084004 | 4.30e−02 | 2.68e−01 | naïve B cells | 0.0038983 | 3.69e−02 | 1.39e−01 |
T.cells.CD8 | −0.0134798 | 5.95e−02 | 2.68e−01 | CD4+ Tem | −0.0029231 | 3.70e−02 | 1.39e−01 |
Macrophages.M0 | 0.0006095 | 6.10e−02 | 2.68e−01 | B cells | 0.0064601 | 5.44e−02 | 1.63e−01 |
