Table 2 Candidate upstream transcription factors based on DEGs associated with the Acute and Chronic Drinking groups.

From: Genome-wide transcriptomics of the amygdala reveals similar oligodendrocyte-related responses to acute and chronic alcohol drinking in female mice

 

Drinking groups

   

Drinking condition

Gene symbol

Gene name

Actual targets

p-val

z-score

Acute

Taf3

TATA-Box Binding Protein Associated Factor 3

2

1.04E−04

16.02

 

c-Jun

Jun Proto-Oncogene, AP-1 Transcription Factor Subunit

7

2.94E−04

5.76

 

c-Fos

Fos Proto-Oncogene, AP-1 Transcription Factor Subunit

5

1.87E−04

5.27

 

Sox17

SRY (Sex Determining Region Y)-Box Transcription Factor 17

22

3.60E−04

3.63

Chronic

Rbpj

Recombination Signal Binding Protein for Immunoglobulin Kappa J Region

58

2.27E−11

7.18

 

Sox17

SRY (Sex Determining Region Y)-Box Transcription Factor 17

69

4.86E−11

6.70

 

Foxp3

Forkhead Box P3

57

4.62E−08

5.69

 

Tal1

TAL BHLH Transcription Factor 1, Erythroid Differentiation Factor

61

9.83E−08

5.45

 

Creb1

CAMP Responsive Element Binding Protein 1

44

1.29E−07

5.74

 

Ets1

ETS Proto-Oncogene 1, Transcription Factor

53

9.50E−07

5.09

 

c-Myc

MYC Proto-Oncogene, BHLH Transcription Factor

37

6.78E−05

4.22

 

Runx1

Runt-Related Transcription Factor 1

46

1.17E−04

3.94

 

Gata-2

GATA Binding Protein 2

23

1.63E−04

4.20

 

E2f1

E2F Transcription Factor 1

37

1.79E−04

3.92

 

Zfx

Zinc Finger Protein X-Linked

23

2.20E−04

4.10

 

Gabp

GA Binding Protein Transcription Factor Subunit Alpha

35

3.97E−04

3.69

 

Cebpe

CCAAT/Enhancer Binding Protein (C/EBP), Epsilon

4

6.07E−04

5.85

 

Yy1

YY1 Transcription Factor

13

7.79E−04

3.95

 

Ash2

ASH2 Like, Histone Lysine Methyltransferase Complex Subunit

21

2.54E−03

3.21

 

Glis3

GLIS Family Zinc Finger 3

20

2.82E−03

3.19

 

Klf9

Kruppel Like Factor 9

3

3.47E−03

4.93

  1. DEGs were used with GeneGo MetaCore to detect upstream transcription factors, which were ranked by z-score. 4 and 17 upstream transcription factors were identified in the Acute and Chronic Drinking groups, respectively.