Table 2 The number of genes for which brain tissue-specific expression levels can be reliably predicted by BrainGENIE (40-PC model), by PrediXcan, or by both methods.
From: BrainGENIE: The Brain Gene Expression and Network Imputation Engine
Brain tissue | BrainGENIE | PrediXcan | Overlap |
|---|---|---|---|
Amygdala | 4265 | 2787 | 504 |
Anterior cingulate cortex BA24 | 6799 | 3544 | 992 |
Caudate basal ganglia | 10,772 | 5004 | 2225 |
Cerebellum (Fresh frozen) | 9573 | 5753 | 2530 |
Cerebellum (PAXGene preserved) | 10,098 | 6794 | 3019 |
Frontal cortex (PAXGene preserved) | 10,186 | 5500 | 2408 |
Frontal Cortex (Fresh frozen) | 11,816 | 4563 | 2289 |
Hippocampus | 4008 | 3688 | 588 |
Hypothalamus | 5749 | 3652 | 873 |
Nucleus accumbens basal ganglia | 11,252 | 4851 | 2252 |
Putamen basal ganglia | 10,350 | 4436 | 2067 |
Substantia nigra | 2947 | 2559 | 311 |
