Table 2 Differences in proteins between HIP and LIP based on assigned cluster.
Cluster | Protein | LIP | HIP | HIP vs. LIP | ||||
|---|---|---|---|---|---|---|---|---|
(N = 73) | (N = 53) | |||||||
mean | sd | mean | sd | F1 | p value1 | p.adj2 | ||
Cluster 1 | EN-RAGE | 2.14 | 0.60 | 2.31 | 0.69 | 2.78 | 0.098 | 0.245 |
CCL23 | 9.66 | 0.47 | 9.73 | 0.44 | 0.81 | 0.368 | 0.461 | |
CD8A | 9.45 | 0.62 | 9.59 | 0.67 | 1.31 | 0.255 | 0.425 | |
NT-3 | 1.88 | 0.36 | 2.10 | 0.48 | 9.30 | 0.003 | 0.014 | |
SCF | 9.11 | 0.34 | 9.08 | 0.36 | 0.17 | 0.682 | 0.682 | |
Cluster 2 | DNER | 8.40 | 0.26 | 8.43 | 0.23 | 0.50 | 0.481 | 0.578 |
uPA | 9.38 | 0.22 | 9.59 | 0.26 | 25.55 | <0.001 | <0.001 | |
TWEAK | 8.51 | 0.26 | 8.64 | 0.27 | 7.92 | 0.006 | 0.017 | |
CST5 | 5.99 | 0.43 | 6.15 | 0.46 | 4.01 | 0.048 | 0.111 | |
OPG | 9.64 | 0.28 | 9.85 | 0.30 | 16.47 | <0.001 | 0.001 | |
CCL28 | 2.19 | 0.32 | 2.38 | 0.39 | 9.33 | 0.003 | 0.011 | |
MMP-10 | 8.98 | 0.74 | 8.94 | 0.72 | 0.09 | 0.758 | 0.827 | |
TNFB | 4.61 | 0.40 | 4.54 | 0.34 | 1.06 | 0.305 | 0.523 | |
LIF-R | 3.72 | 0.21 | 3.75 | 0.22 | 0.57 | 0.45 | 0.578 | |
Flt3L | 8.59 | 0.39 | 8.72 | 0.41 | 3.75 | 0.055 | 0.111 | |
CX3CL1 | 3.82 | 0.35 | 3.88 | 0.37 | 0.82 | 0.366 | 0.549 | |
FGF-19 | 7.75 | 0.83 | 7.74 | 0.95 | <0.01 | 0.955 | 0.955 | |
Cluster 3 | FGF-23 | 1.84 | 0.30 | 1.91 | 0.31 | 2.54 | 0.114 | 0.152 |
IL-18R1 | 7.71 | 0.37 | 7.86 | 0.47 | 4.57 | 0.035 | 0.069 | |
HGF | 7.68 | 0.35 | 8.09 | 0.43 | 36.93 | <0.001 | <0.001 | |
OSM | 4.18 | 0.80 | 4.08 | 0.88 | 0.51 | 0.475 | 0.475 | |
TGF-α | 2.41 | 0.25 | 2.46 | 0.23 | 1.42 | 0.236 | 0.27 | |
IL6 | 1.70 | 0.49 | 1.87 | 0.52 | 3.33 | 0.071 | 0.113 | |
FGF-21 | 4.54 | 1.13 | 5.08 | 1.42 | 5.73 | 0.018 | 0.048 | |
CCL19 | 8.59 | 0.62 | 8.87 | 0.70 | 7.73 | 0.006 | 0.025 | |
Cluster 4 | CCL25 | 5.62 | 0.46 | 5.92 | 0.48 | 12.92 | <0.001 | 0.001 |
CDCP1 | 2.04 | 0.48 | 2.33 | 0.69 | 7.99 | 0.006 | 0.007 | |
IL18 | 8.32 | 0.52 | 8.75 | 0.55 | 19.85 | <0.001 | <0.001 | |
MCP-1 | 10.48 | 0.36 | 10.68 | 0.35 | 8.99 | 0.003 | 0.005 | |
CCL11 | 7.22 | 0.41 | 7.35 | 0.50 | 9.55 | 0.095 | 0.095 | |
TRAIL | 7.52 | 0.30 | 7.67 | 0.27 | 8.15 | 0.005 | 0.007 | |
IL-10RB | 5.74 | 0.26 | 5.94 | 0.26 | 19.20 | <0.001 | <0.001 | |
CD5 | 4.94 | 0.27 | 5.10 | 0.28 | 10.59 | 0.001 | 0.003 | |
VEGFA | 10.41 | 0.29 | 10.77 | 0.36 | 38.99 | <0.001 | <0.001 | |
CSF-1 | 9.68 | 0.19 | 9.80 | 0.19 | 11.00 | 0.001 | 0.003 | |
TNF | 2.05 | 0.33 | 2.29 | 0.30 | 17.67 | <0.001 | <0.001 | |
IL-15RA | 0.94 | 0.08 | 0.98 | 0.16 | 3.52 | 0.063 | 0.068 | |
SLAMF1 | 2.10 | 0.30 | 2.22 | 0.40 | 3.87 | 0.052 | 0.061 | |
Cluster 5 | CD6 | 5.88 | 0.42 | 6.06 | 0.38 | - | - | - |
TNFRSF9 | 6.21 | 0.35 | 6.34 | 0.35 | - | - | - | |
TRANCE | 4.47 | 0.63 | 4.50 | 0.65 | - | - | - | |
CXCL10 | 8.94 | 0.80 | 9.20 | 0.71 | - | - | - | |
CXCL9 | 6.04 | 0.66 | 6.13 | 0.50 | - | - | - | |
IFN-γ | 6.23 | 0.80 | 6.36 | 0.81 | - | - | - | |
IL-12B | 5.85 | 0.56 | 5.79 | 0.60 | - | - | - | |
Cluster 6 | ADA | 5.04 | 0.32 | 5.68 | 0.62 | 72.53 | <0001 | <0.001 |
CD40 | 10.46 | 0.37 | 11.67 | 0.49 | 344.60 | <0.001 | <0.001 | |
SIRT2 | 3.95 | 1.08 | 7.29 | 1.13 | 387.69 | <0.001 | <0.001 | |
AXIN1* | 3.68 | 1.70 | 7.58 | 1.10 | 514.12 | <0.001 | <0.001 | |
STAMBP | 4.26 | 0.97 | 7.53 | 1.04 | 622.81 | <0.001 | <0.001 | |
CD244 | 5.66 | 0.25 | 6.43 | 0.43 | 185.77 | <0.001 | <0.001 | |
PD-L1 | 4.96 | 0.24 | 5.61 | 0.38 | 149.54 | <0.001 | <0.001 | |
EIF4EBP1 | 7.51 | 0.70 | 9.73 | 0.83 | 369.42 | <0.001 | <0.001 | |
CASP8 | 1.71 | 0.28 | 2.76 | 0.59 | 223.47 | <0.001 | <0.001 | |
TNFSF14 | 3.52 | 0.49 | 4.69 | 0.54 | 167.40 | <0.001 | <0.001 | |
ST1A1* | 2.53 | 0.61 | 3.73 | 0.56 | 143.19 | <0.001 | <0.001 | |
CCL3 | 4.61 | 0.36 | 5.23 | 0.43 | 78.04 | <0.001 | <0.001 | |
CCL4 | 5.13 | 0.47 | 5.81 | 0.51 | 59.69 | <0.001 | <0.001 | |
MCP-2 | 7.84 | 0.58 | 8.67 | 0.63 | 59.18 | <0.001 | <0.001 | |
LAPTGF β-1 | 5.34 | 0.28 | 6.32 | 0.49 | 206.91 | <0.001 | <0.001 | |
CXCL6 | 7.40 | 0.68 | 9.03 | 0.78 | 190.25 | <0.001 | <0.001 | |
MCP-4 | 12.87 | 0.60 | 14.21 | 0.71 | 128.95 | <0.001 | <0.001 | |
CXCL11 | 6.58 | 0.70 | 7.91 | 0.77 | 110.46 | <0.001 | <0.001 | |
CXCL5 | 9.80 | 1.41 | 12.24 | 0.77 | 146.55 | <0.001 | <0.001 | |
CXCL1 | 8.92 | 0.93 | 10.49 | 0.76 | 116.35 | <0.001 | <0.001 | |
IL-8 | 3.99 | 0.45 | 4.69 | 0.51 | 67.17 | <0.001 | <0.001 | |
IL-7 | 1.71 | 0.51 | 2.76 | 0.58 | 152.07 | <0.001 | <0.001 | |
MMP1 | 12.70 | 0.99 | 13.92 | 0.89 | 52.15 | <0.001 | <0.001 | |
Cluster 7 | IL-17A | 1.69 | 0.27 | 1.89 | 0.55 | 8.52 | 0.004 | 0.013 |
IL-17C | 2.74 | 0.66 | 3.08 | 1.05 | 4.88 | 0.029 | 0.039 | |
IL-10 | 3.14 | 0.41 | 3.35 | 0.43 | 7.67 | 0.007 | 0.013 | |
CCL20 | 6.91 | 0.86 | 7.20 | 1.07 | 3.63 | 0.059 | 0.059 | |