Table 1 Comprehensive overview of the differentially expressed genes per cell line grouped according to their involvement in cellular processes important for tumorigenesis. Genes involved in more than one process are listed several times.
Epithelial to mesenchymal transition | Migration | Extracellular matrix/adhesion | Transcription | G protein signaling | cytoskeleton organization | ||||
|---|---|---|---|---|---|---|---|---|---|
HCT-116 | DSC2 | ARPC3 | PBX1 | S100A4 | DSC2 | APOBEC3C | ARPC3 | ||
FOXA2 | DSC2 | PDLIM5 | SEMA3A | TGFB2 | APOBEC3G | S100A4 | |||
PBX1 | FOXA2 | RPS4Y1 | TGFB2 | S100A4 | ZNF419 | TGFB2 | |||
S100A4 | NOSTRIN | ZNF608 | |||||||
TGFB2 | |||||||||
HT-29 | AKAP12 | AKAP12 | DMKN | ZNF260 | AKAP12 | CSAG1 | |||
DMKN | DMKN | ZNF420 | NAV1 | ||||||
TRABD2A | NAV1 | ZNF605 | |||||||
TRABD2A | ZNF615 | ||||||||
ZNF618 | |||||||||
U-2 OS | ACKR3 | MIR205HG | ACKR3 | IFI44 | PLAC1 | ADAMTSL5 | HES7 | ADGRG1 | ADD2 |
ADGRG1 | MUC15 | ADD2 | IFI44L | PLAC8 | BST2 | MLLT3 | ADGRL3 | AMN1 | |
AREG | MUC4 | ADGRG1 | IGFBP7 | PLXNA4 | CDH6 | TSHZ2 | ADGRL4 | ANK3 | |
BCL2A1 | NOV | AREG | IL17RC | PRR16 | COL20A1 | ZFP14 | ARHGEF4 | ARHGEF4 | |
BHLHE41 | NTRK3 | ARHGEF4 | ITGA2 | RGS16 | COL22A1 | ZFP82 | CHN1 | CNN1 | |
CCL2 | PAM | BCL2A1 | ITGB1BP1 | RGS4 | COL5A3 | ZNF566 | DOCK4 | DES | |
CDH6 | PARD6A | BHLHE41 | KCNB1 | RHOF | COL8A1 | ZNF788 | GLP2R | DNAH2 | |
CHN1 | PAX7 | BST2 | LAMA4 | RIPOR2 | CST6 | ZNF793-AS1 | KNDC1 | DRAXIN | |
CNN1 | PDE4B | CCL2 | LAMC2 | SELENBP1 | FAP | OR51B5 | EPPK1 | ||
CPA4 | PDGFA | CDH6 | LEMD1 | SERPINF1 | HAS2 | PARD6A | FGD4 | ||
CRYAB | PLAC1PLAC8 | CDKL1 | LIPH | SHKBP1 | ITGA2 | PMVK | FMNL2 | ||
CST6 | PRR16 | CHN1 | LRRC32 | SLC2A1-AS1 | ITGB1BP1 | RASGRP4 | KIAA1211 | ||
CX3CL1 | RGS16 | CNN1 | LSP1 | SLFN5 | LAMA4 | RGS16 | LLGL2 | ||
DES | RGS4 | CRYAB | MAGEA10 | SPANXB1 | LAMC2 | RGS4 | LSP1 | ||
DOC2B | RHOF | CST6 | MAP2K6 | SPANXC | MUC15 | RHOF | MISP | ||
DRAXIN | SELENBP1 | CX3CL1 | MAPK9 | SPP1 | MUC4 | RIPOR2 | MYH16 | ||
ETV1 | SERPINF1 | DDIT4 | METRN | SRGN | NINJ2 | MYL1 | |||
FAP | SHKBP1 | DES | MGST1 | ST6GAL1 | NOV | MYL2 | |||
FMNL2 | SLC2A1-AS1 | DOC2B | MIR205HG | STUB1 | PARD6A | PARD6A | |||
HAS2 | SLFN5 | DRAXIN | MUC15 | SYT8 | PCDHA12 | PLXNA4 | |||
IGFBP7 | SPANXB1 | DYSF | MUC4 | TADA1 | PCDHB12 | RHOF | |||
ITGA2 | SPP1 | EDN2 | MYL2 | TGM1 | SPP1 | SNX13 | |||
LAMA4 | ST6GAL1 | EGLN3 | NDUFS3 | THSD7A | SRGN | THSD7A | |||
LAMC2 | STUB1 | EPPK1 | NELL1 | TMEM130 | STUB1 | TNNT2 | |||
LEMD1 | TGM1 | ETNK2 | NINJ2 | TNFAIP6 | TGM1 | UNC5C | |||
LIPH | THSD7A | ETV1 | NOV | TNFRSF9 | TMTC2 | ||||
MAGEA10 | TNFAIP6 | EVI2A | NTRK3 | TOX | TNFAIP6 | ||||
MAP2K6 | VGF | FAM3A | PAM | TSHZ2 | XYLT1 | ||||
MGST1 | WNT5B | FAP | PARD6A | UNC5C | |||||
FMNL2 | PAX7 | VGF | |||||||
GADL1 | PDE4B | WNT5B | |||||||
GPR132 | PDGFA | XKR4 | |||||||
HAS2 | PICSAR | ZFP82 | |||||||
HOXC11 | |||||||||
