Table 1 Top differentially regulated lncRNAs.
Transcript ID | Gene Symbol | Source | Transcript length (nt) | Type | Associated gene symbol | Mean AAR | Mean RM | Fold change (AAR vs RM) | Adjusted p-value |
|---|---|---|---|---|---|---|---|---|---|
Increased in AAR | |||||||||
ENSMUST00000127786 | Xist | Ensembl | 17,041 | Intergenic | – | 10053.44 | 187.61 | 53.59 | 0,019 |
AK030243 | fantom3 | 2295 | Intergenic | – | 1001.42 | 63.87 | 15.68 | 0,004 | |
AK035076 | fantom3 | 2397 | Intergenic | – | 318.67 | 20.97 | 15.20 | 0,035 | |
ENSMUST00000153883 | Xist | Ensembl | 626 | Intergenic | – | 746.60 | 50.04 | 14.92 | 0,020 |
ENSMUST00000160241 | Gm15810 | Ensembl | 681 | Antisense overlap | Phactr1 | 526.82 | 43.02 | 12.25 | 0,019 |
uc009bpe.1 | TCR-beta chain | UCSC_kg | 740 | Intergenic | – | 708.86 | 61.62 | 11.50 | 0,036 |
ENSMUST00000133015 | Gm12542 | Ensembl | 647 | Antisense overlap | Snx30 | 351.72 | 33.75 | 10.42 | 0,048 |
AK087032 | fantom3 | 2311 | Intergenic | – | 3904.02 | 392.42 | 9.95 | 0,005 | |
uc009iqv.1 | Art1 | UCSC_kg | 2341 | Antisense overlap | Chrna10 | 1826.98 | 187.41 | 9.75 | 0,004 |
AK021184 | NRED | 703 | Antisense overlap | Adam10 | 2086.07 | 214.43 | 9.73 | 0,021 | |
Decreased in AAR | |||||||||
ENSMUST00000120647 | Gm11839 | Ensembl | 1953 | Intergenic | – | 20.74 | 1917.31 | 0.011 | 0,035 |
AK050743 | fantom3 | 2885 | Intergenic | – | 63.26 | 5466.28 | 0.012 | 0,018 | |
ENSMUST00000121449 | Gm15502 | Ensembl | 208 | Sense overlap | Cyp3a13 | 445.75 | 38278.28 | 0.012 | 0,003 |
ENSMUST00000145087 | Gm6706 | Ensembl | 318 | Intergenic | – | 45.86 | 3602.22 | 0.013 | 0,008 |
ENSMUST00000120853 | Gm11400 | Ensembl | 1214 | Sense overlap | Sfi1 | 51.71 | 3894.68 | 0.013 | 0,004 |
NR_003513 | Neat1 | RefSeq_NR | 3177 | Intergenic | – | 58.38 | 4353.39 | 0.013 | 0,015 |
ENSMUST00000162504 | Gm8459 | Ensembl | 760 | Intergenic | – | 87.79 | 5808.41 | 0.015 | 0,000 |
ENSMUST00000120973 | Gm5379 | Ensembl | 826 | Intergenic | – | 57.67 | 3463.26 | 0.017 | 0,019 |
uc007zya.1 | Son | UCSC_kg | 10879 | Sense overlap | Son | 26.29 | 1453.14 | 0.018 | 0,001 |
ENSMUST00000122299 | Gm15466 | Ensembl | 333 | Sense overlap | Mrps28 | 253.89 | 13834.26 | 0.018 | 0,005 |
