Abstract
Neutrophils, the first cells to arrive at the site of inflammation, are rather short-lived cells and thus have to be constantly replenished. During neutrophil development, vesicle dynamics need to be fine-tuned and impaired vesicle trafficking has been linked to failure in neutrophil maturation. Here, we characterized the role of VPS18 as a central core component of CORVET & HOPS tethering complexes for neutrophil development. Using CRISPR/Cas9-engineered Hoxb8 cells with heterozygous mutations in Vps18, we found that VPS18 deficiency interfered with neutrophil development due to tethering complex instability. As a result, vesicle dynamics were impaired with a strong increase in LC3B-II and p62 levels, indicating autophagosome accumulation and reduced autophagic flux. With transmission electron microscopy, we verified the increase in autophagosomes and also found irregularly shaped vesicular structures in Vps18 mutants. Subsequently, Vps18 mutant neutrophil progenitors underwent premature apoptosis. We described a novel patient with a heterozygous stop-gain mutation in VPS18 suffering from neutropenia and recurrent infections. To verify our findings in the human system, we used human induced pluripotent stem cells (iPSCs). Upon differentiation into neutrophils, loss of VPS18 resulted in an almost complete absence of iPSC-derived developing neutrophils. Heterozygous VPS18 mutant and patient mutation-harboring iPSCs were characterized by strongly reduced numbers of developing neutrophils. Zebrafish larvae with heterozygous mutations in vps18 were also characterized by significantly reduced neutrophil numbers. This study shows the pivotal impact of VPS18 for adequate vesicle dynamics during neutrophil development which might be relevant in the context of vesicle trafficking during granulopoiesis and congenital neutropenia.
Similar content being viewed by others
Data availability
The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD049111.
References
Borregaard N. Neutrophils, from marrow to microbes. Immunity. 2010;33:657–70.
Ley K, Laudanna C, Cybulsky MI, Nourshargh S. Getting to the site of inflammation: the leukocyte adhesion cascade updated. Nat Rev Immunol. 2007;7:678–89.
Cowland JB, Borregaard N. Granulopoiesis and granules of human neutrophils. Immunol Rev. 2016;273:11–28.
Riffelmacher T, Clarke A, Richter FC, Stranks A, Pandey S, Danielli S, et al. Autophagy-dependent generation of free fatty acids is critical for normal neutrophil differentiation. Immunity. 2017;47:466–80.e5.
Evrard M, Kwok IWH, Chong SZ, Teng KWW, Becht E, Chen J, et al. Developmental analysis of bone marrow neutrophils reveals populations specialized in expansion, trafficking, and effector functions. Immunity. 2018;48:364–79.e8.
Balderhaar HJ, Ungermann C. CORVET and HOPS tethering complexes - coordinators of endosome and lysosome fusion. J Cell Sci. 2013;126:1307–16.
Seals DF, Eitzen G, Margolis N, Wickner WT, Price A. A Ypt/Rab effector complex containing the Sec1 homolog Vps33p is required for homotypic vacuole fusion. Proc Natl Acad Sci USA. 2000;97:9402–7.
Peplowska K, Markgraf DF, Ostrowicz CW, Bange G, Ungermann C. The CORVET tethering complex interacts with the yeast Rab5 homolog Vps21 and is involved in endo-lysosomal biogenesis. Dev Cell. 2007;12:739–50.
Ostrowicz CW, Brocker C, Ahnert F, Nordmann M, Lachmann J, Peplowska K, et al. Defined subunit arrangement and rab interactions are required for functionality of the HOPS tethering complex. Traffic. 2010;11:1334–46.
Sofou K, Meier K, Sanderson LE, Kaminski D, Montoliu-Gaya L, Samuelsson E, et al. Bi-allelic VPS16 variants limit HOPS/CORVET levels and cause a mucopolysaccharidosis-like disease. EMBO Mol Med. 2021;13:e13376.
Yildiz Y, Kosukcu C, Aygun D, Akcaboy M, Oztek Celebi FZ, Tasci Yildiz Y, et al. Homozygous missense VPS16 variant is associated with a novel disease, resembling mucopolysaccharidosis-plus syndrome in two siblings. Clin Genet. 2021;100:308–17.
Pavlova EV, Shatunov A, Wartosch L, Moskvina AI, Nikolaeva LE, Bright NA, et al. The lysosomal disease caused by mutant VPS33A. Hum Mol Genet. 2019;28:2514–30.
Vilboux T, Lev A, Malicdan MC, Simon AJ, Jarvinen P, Racek T, et al. A congenital neutrophil defect syndrome associated with mutations in VPS45. N Engl J Med. 2013;369:54–65.
Kollner I, Sodeik B, Schreek S, Heyn H, von Neuhoff N, Germeshausen M, et al. Mutations in neutrophil elastase causing congenital neutropenia lead to cytoplasmic protein accumulation and induction of the unfolded protein response. Blood. 2006;108:493–500.
Kolehmainen J, Black GC, Saarinen A, Chandler K, Clayton-Smith J, Traskelin AL, et al. Cohen syndrome is caused by mutations in a novel gene, COH1, encoding a transmembrane protein with a presumed role in vesicle-mediated sorting and intracellular protein transport. Am J Hum Genet. 2003;72:1359–69.
Brocker C, Kuhlee A, Gatsogiannis C, Balderhaar HJ, Honscher C, Engelbrecht-Vandre S, et al. Molecular architecture of the multisubunit homotypic fusion and vacuole protein sorting (HOPS) tethering complex. Proc Natl Acad Sci USA. 2012;109:1991–6.
Graham SC, Wartosch L, Gray SR, Scourfield EJ, Deane JE, Luzio JP, et al. Structural basis of Vps33A recruitment to the human HOPS complex by Vps16. Proc Natl Acad Sci USA. 2013;110:13345–50.
Wartosch L, Gunesdogan U, Graham SC, Luzio JP. Recruitment of VPS33A to HOPS by VPS16 is required for lysosome fusion with endosomes and autophagosomes. Traffic. 2015;16:727–42.
Hunter MR, Scourfield EJ, Emmott E, Graham SC. VPS18 recruits VPS41 to the human HOPS complex via a RING-RING interaction. Biochem J. 2017;474:3615–26.
Peng C, Ye J, Yan S, Kong S, Shen Y, Li C, et al. Ablation of vacuole protein sorting 18 (Vps18) gene leads to neurodegeneration and impaired neuronal migration by disrupting multiple vesicle transport pathways to lysosomes. J Biol Chem. 2012;287:32861–73.
Golling G, Amsterdam A, Sun Z, Antonelli M, Maldonado E, Chen W, et al. Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development. Nat Genet. 2002;31:135–40.
Sadler KC, Amsterdam A, Soroka C, Boyer J, Hopkins N. A genetic screen in zebrafish identifies the mutants vps18, nf2 and foie gras as models of liver disease. Development. 2005;132:3561–72.
Wang GG, Calvo KR, Pasillas MP, Sykes DB, Hacker H, Kamps MP. Quantitative production of macrophages or neutrophils ex vivo using conditional Hoxb8. Nat Methods. 2006;3:287–93.
Rozman S, Yousefi S, Oberson K, Kaufmann T, Benarafa C, Simon HU. The generation of neutrophils in the bone marrow is controlled by autophagy. Cell Death Differ. 2015;22:445–56.
Kwok I, Becht E, Xia Y, Ng M, Teh YC, Tan L, et al. Combinatorial single-cell analyses of granulocyte-monocyte progenitor heterogeneity reveals an early uni-potent neutrophil progenitor. Immunity. 2020;53:303–18.e5.
Behrmann H, Lurick A, Kuhlee A, Balderhaar HK, Brocker C, Kummel D, et al. Structural identification of the Vps18 beta-propeller reveals a critical role in the HOPS complex stability and function. J Biol Chem. 2014;289:33503–12.
Bhattarai KR, Riaz TA, Kim HR, Chae HJ. The aftermath of the interplay between the endoplasmic reticulum stress response and redox signaling. Exp Mol Med. 2021;53:151–67.
Hetz C, Zhang K, Kaufman RJ. Mechanisms, regulation and functions of the unfolded protein response. Nat Rev Mol Cell Biol. 2020;21:421–38.
Kaufman RJ. Orchestrating the unfolded protein response in health and disease. J Clin Invest. 2002;110:1389–98.
Linder MI, Mizoguchi Y, Hesse S, Csaba G, Tatematsu M, Lyszkiewicz M, et al. Human genetic defects in SRP19 and SRPRA cause severe congenital neutropenia with distinctive proteome changes. Blood. 2023;141:645–58.
Frenz-Wiessner S, Fairley SD, Buser M, Goek I, Salewskij K, Jonsson G, et al. Generation of complex bone marrow organoids from human induced pluripotent stem cells. Nat Methods. 2024.
Cai X, Chen X, Wu S, Liu W, Zhang X, Zhang D, et al. Homozygous mutation of VPS16 gene is responsible for an autosomal recessive adolescent-onset primary dystonia. Sci Rep. 2016;6:25834.
Edvardson S, Gerhard F, Jalas C, Lachmann J, Golan D, Saada A, et al. Hypomyelination and developmental delay associated with VPS11 mutation in Ashkenazi-Jewish patients. J Med Genet. 2015;52:749–53.
Plemel RL, Lobingier BT, Brett CL, Angers CG, Nickerson DP, Paulsel A, et al. Subunit organization and Rab interactions of Vps-C protein complexes that control endolysosomal membrane traffic. Mol Biol Cell. 2011;22:1353–63.
Zhang J, Lachance V, Schaffner A, Li X, Fedick A, Kaye LE, et al. A founder mutation in VPS11 causes an autosomal recessive leukoencephalopathy linked to autophagic defects. PLoS Genet. 2016;12:e1005848.
Dale DC. How I manage children with neutropenia. Br J Haematol. 2017;178:351–63.
Schurch C, Schaefer T, Muller JS, Hanns P, Arnone M, Dumlin A, et al. SRP54 mutations induce congenital neutropenia via dominant-negative effects on XBP1 splicing. Blood. 2021;137:1340–52.
Steel D, Zech M, Zhao C, Barwick KES, Burke D, Demailly D, et al. Loss-of-function variants in HOPS complex genes VPS16 and VPS41 cause early onset dystonia associated with lysosomal abnormalities. Ann Neurol. 2020;88:867–77.
Ng LG, Ballesteros I, Cassatella MA, Egeblad M, Fridlender ZG, Gabrilovich D, et al. From complexity to consensus: a roadmap for neutrophil classification. Immunity. 2025;58:1890–903.
Zehrer A, Pick R, Salvermoser M, Boda A, Miller M, Stark K, et al. A fundamental role of Myh9 for neutrophil migration in innate immunity. J Immunol. 2018;201:1748–64.
Redecke V, Wu R, Zhou J, Finkelstein D, Chaturvedi V, High AA, et al. Hematopoietic progenitor cell lines with myeloid and lymphoid potential. Nat Methods. 2013;10:795–803.
Schymeinsky J, Sindrilaru A, Frommhold D, Sperandio M, Gerstl R, Then C, et al. The Vav binding site of the non-receptor tyrosine kinase Syk at Tyr 348 is critical for beta2 integrin (CD11/CD18)-mediated neutrophil migration. Blood. 2006;108:3919–27.
Walzog B, Offermanns S, Zakrzewicz A, Gaehtgens P, Ley K. Beta2 integrins mediate protein tyrosine phosphorylation in human neutrophils. J Leukoc Biol. 1996;59:747–53.
Sanjana NE, Shalem O, Zhang F. Improved vectors and genome-wide libraries for CRISPR screening. Nat Methods. 2014;11:783–4.
Stewart SA, Dykxhoorn DM, Palliser D, Mizuno H, Yu EY, An DS, et al. Lentivirus-delivered stable gene silencing by RNAi in primary cells. RNA. 2003;9:493–501.
Pick R, Begandt D, Stocker TJ, Salvermoser M, Thome S, Bottcher RT, et al. Coronin 1A, a novel player in integrin biology, controls neutrophil trafficking in innate immunity. Blood. 2017;130:847–58.
Bader A, Gao J, Riviere T, Schmid B, Walzog B, Maier-Begandt D. Molecular insights into neutrophil biology from the zebrafish perspective: lessons from CD18 deficiency. Front Immunol. 2021;12:677994.
Hall C, Flores MV, Storm T, Crosier K, Crosier P. The zebrafish lysozyme C promoter drives myeloid-specific expression in transgenic fish. BMC Dev Biol. 2007;7:42.
Lawson ND, Weinstein BM. In vivo imaging of embryonic vascular development using transgenic zebrafish. Dev Biol. 2002;248:307–18.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, et al. Fiji: an open-source platform for biological-image analysis. Nat Methods. 2012;9:676–82.
Acknowledgements
The authors thank Jennifer Truong, Tanja Vlaovic, Tanja Weißer, Ulrike Wilhelm-Forster, Sabine Schlink, Azin Rasti, and Hafez Gabara for excellent technical assistance. The authors are grateful to Dr. Steffen Dietzel (Core Facility Bioimaging, Biomedical Center, LMU Munich) for the support with fluorescence microscopy. We acknowledge the Core Facility Flow Cytometry at the Biomedical Center, LMU Munich, for providing equipment and expertise.
Funding
German Research Foundation collaborative research grant CRC914 (projects A02 (DM-B and BW), A08 (CK), A13 (FM)) and Z03 (BW)). German Research Foundation collaborative research grant TRR332 (#449437943; projects A02 (OS), B01 (CK) and C03 (DM-B and BW)). Open Access funding enabled and organized by Projekt DEAL.
Author information
Authors and Affiliations
Contributions
DM-B designed and performed experiments, analyzed data and wrote the manuscript. AB performed experiments, analyzed data and wrote the manuscript. JG, MIL, JC, FM, MRi, RdC, AZ, KM, XW, EdVG, MK, MRo, MT, BP and OS performed experiments and analyzed data. SF-W, BS, CK and BW provided their expertise. IS, JY, OS-S and RS provided critical patient information. DM-B and BW acquired funding and supervised the study.
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing interests.
Ethics approval and consent to participate
All methods were performed in accordance with the relevant guidelines and regulations. All studies involving human samples were conducted in accordance with the Declaration of Helsinki. For isolation of human neutrophils, written informed consent was obtained from all volunteers prior to blood donation. The blood collection was approved by the ethics committee of the LMU Munich (No. 259-14). Written informed consent was obtained from the family of the patient to perform research on the samples of the patient and the father. Collection of blood samples to perform genome analyses at the Dr. von Hauner Children’s Hospital was approved by the ethics committee of the LMU Munich (No. 66-14). The use of iPS cells was authorized by the ethics committee of the LMU Munich (No. 24-0697 OMICS-SE). Adult zebrafish were raised and housed and experiments with zebrafish larvae were performed in accordance with animal protection standards of the LMU Munich and approved by the government of Upper Bavaria (Regierung von Oberbayern, No. 55.2-2532.Vet_02-17-21).
Additional information
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Edited by Nirmal Robinson
Supplementary information
Rights and permissions
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
About this article
Cite this article
Gao, J., Bader, A., Linder, M.I. et al. Mutations in VPS18 lead to a neutrophil maturation defect associated with disturbed vesicle homeostasis. Cell Death Dis (2026). https://doi.org/10.1038/s41419-025-08338-w
Received:
Revised:
Accepted:
Published:
DOI: https://doi.org/10.1038/s41419-025-08338-w


