Table 1 Top 15 genes with the negative correlation of DNA methylation and mRNA expression between NOA and OA
Probe name | Gene symbol | Gene ID | Reference accession | Region | ρ value | P value methylation | Q value methylation | Δβ value (NOA/OA) | Fold change (NOA/OA) |
|---|---|---|---|---|---|---|---|---|---|
cg07085664 | CHRNB3 | 1142 | NM_000749 | Body | −0.757 | 0.048 | 0.124 | 0.442 | 0.429 |
cg07421329 | EFHA2 | 286097 | NM_181723 | Body | −0.757 | 0.048 | 0.124 | −0.345 | 6.455 |
cg02134046 | SPERT | 220082 | NM_152719 | 3′-UTR | −0.786 | 0.034 | 0.100 | 0.413 | 0.002 |
cg13823366 | FBXO39 | 162517 | NM_153230 | TSS1500 | −0.786 | 0.034 | 0.100 | 0.387 | 0.003 |
cg00601486 | H1FNT | 341567 | NM_181788 | 1st Exon | −0.786 | 0.034 | 0.100 | 0.504 | 0.005 |
cg24153003 | OAZ3 | 51686 | NM_001134939 | Body | −0.786 | 0.034 | 0.100 | 0.213 | 0.005 |
cg27623334 | CXorf61 | 203413 | NM_001017978 | TSS200 | −0.786 | 0.034 | 0.100 | 0.544 | 0.006 |
cg13513349 | ADAM29 | 11086 | NM_001130704 | 5′-UTR | −0.786 | 0.034 | 0.100 | 0.445 | 0.007 |
cg15822411 | CCDC83 | 220047 | NM_173556 | 1st Exon | −0.786 | 0.034 | 0.100 | 0.310 | 0.009 |
cg09848324 | PDCL2 | 132954 | NM_152401 | Body | −0.786 | 0.034 | 0.100 | 0.514 | 0.009 |
cg26647524 | KBTBD5 | 131377 | NM_152393 | TSS200 | −0.786 | 0.034 | 0.100 | 0.418 | 0.010 |
cg23478805 | ZCCHC13 | 389874 | NM_203303 | TSS200 | −0.786 | 0.034 | 0.100 | 0.572 | 0.010 |
cg22806002 | BTG4 | 54766 | NM_017589 | TSS200 | −0.786 | 0.034 | 0.100 | 0.218 | 0.011 |
cg04864648 | PDHA2 | 5161 | NM_005390 | TSS200 | −0.786 | 0.034 | 0.100 | 0.492 | 0.012 |
cg24803912 | POU5F2 | 134187 | NM_153216 | TSS200 | −0.786 | 0.034 | 0.100 | 0.465 | 0.012 |