Table 2 Gene expression of the TCA cycle genes was entirely downregulated in tumor tissues of both Patient-1 and -2 via whole-transcriptome analysis
Gene name | Fold-change (tumor/normal) | ||
|---|---|---|---|
Patient-1 | Patient-2 | ||
CS | Citrate synthase | 0.28 | 0.45 |
ACO1 | Aconitase 1, soluble | NA | 0.77 |
ACO2 | Aconitase 2, mitochondrial | 0.031 | 0.17 |
IDH1 | Isocitrate dehydrogenase 1 (NADP+), soluble | 3.27 | 2.11 |
IDH2 | Isocitrate dehydrogenase 2 (NADP+), mitochondrial | 0.21 | 0.52 |
IDH3A | Isocitrate dehydrogenase 3 (NAD+) alpha | 0.13 | 0.28 |
IDH3B | Isocitrate dehydrogenase 3 (NAD+) beta | 0.26 | 0.49 |
IDH3G | Isocitrate dehydrogenase 3 (NAD+) gamma | 1.09 | 0.65 |
OGDH | Oxoglutarate (alpha-ketoglutarate) dehydrogenase | 0.18 | 0.19 |
OGDHL | Oxoglutarate dehydrogenase-like | 0.12 | 0.12 |
DLD | Dihydrolipoamide dehydrogenase | 0.11 | 0.45 |
DLST | Dihydrolipoamide S-succinyltransferase | 0.43 | 0.68 |
SUCLG1 | Succinate-CoA ligase, alpha subunit | 0.30 | 0.38 |
SUCLG2 | Succinate-CoA ligase, GDP-forming, beta subunit | 0.22 | 0.57 |
SUCLA2 | Succinate-CoA ligase, ADP-forming, beta subunit | 0.12 | 0.39 |
SDHA | Succinate dehydrogenase complex, subunit A, | 0.10 | 0.46 |
SDHB | Succinate dehydrogenase complex, subunit B, | 0.19 | 0.33 |
SDHC | Succinate dehydrogenase complex, subunit C, | 0.39 | 0.63 |
SDHD | Succinate dehydrogenase complex, subunit D, | NA | 0.63 |
FH | Fumarate hydratase | 0.20 | 0.22 |
MDH1 | Malate dehydrogenase 1, NAD (soluble) | 0.091 | 0.20 |
MDH2 | Malate dehydrogenase 2, NAD (mitochondrial) | 0.17 | 2.35 |
GOT1 | Glutamic-oxaloacetic transaminase 1, soluble | 0.047 | 0.13 |
GOT2 | Glutamic-oxaloacetic transaminase 2, mitochondrial | 0.16 | 0.22 |