Table 2 Hypomethylated m5C sites in 12 candidate genes.
From: NSUN2 stimulates tumor progression via enhancing TIAM2 mRNA stability in pancreatic cancer
chrom | txStart | txEnd | PeakID | Peak_length | transcript_id | GeneName | Foldchange | P_value |
|---|---|---|---|---|---|---|---|---|
chr1 | 100160465 | 100160571 | diffreps_peak_137168 | 106 | ENST00000342895 | LRRC39 | 775.60 | 0 |
chr2 | 88055641 | 88055729 | diffreps_peak_1657499 | 88 | ENST00000347055 | KRCC1 | 439.90 | 6.21725E−15 |
chr2 | 29060301 | 29060860 | diffreps_peak_1594275 | 559 | ENST00000379558 | TOGARAM2 | 581.90 | 0 |
chr2 | 28998142 | 28998253 | diffreps_peak_1594155 | 111 | ENST00000379558 | TOGARAM2 | 9.26 | 1.41337E−09 |
chr2 | 28970938 | 28971114 | diffreps_peak_1594108 | 176 | ENST00000420297 | TOGARAM2 | 259.20 | 2.19326E−09 |
chr2 | 29035463 | 29035656 | diffreps_peak_1594234 | 193 | ENST00000379558 | TOGARAM2 | 5.92 | 1.4855E−09 |
chr6 | 155129981 | 155130417 | diffreps_peak_2704481 | 436 | ENST00000360366 | TIAM2 | 724.00 | 0 |
chr6 | 155183236 | 155183500 | diffreps_peak_2704545 | 264 | ENST00000360366 | TIAM2 | 556.10 | 0 |
chr6 | 155216636 | 155217090 | diffreps_peak_2704569 | 454 | ENST00000275246 | TIAM2 | 20.13 | 0 |
chr6 | 122789048 | 122789220 | diffreps_peak_2679261 | 172 | ENST00000539041 | SMPDL3A | 362.50 | 1.4525E−12 |
chr8 | 97029402 | 97029494 | diffreps_peak_3047253 | 92 | ENST00000220763 | CPQ | 439.90 | 6.21725E−15 |
chr9 | 12821385 | 12821800 | diffreps_peak_3115140 | 415 | ENST00000319264 | LURAP1L | 594.90 | 0 |
chr15 | 51737621 | 51738137 | diffreps_peak_1013885 | 516 | ENST00000267838 | LYSMD2 | 827.20 | 0 |
chr17 | 43900470 | 43900598 | diffreps_peak_1294679 | 128 | ENST00000377184 | MPP2 | 297.90 | 1.40044E−10 |
chr17 | 43907521 | 43907942 | diffreps_peak_1294695 | 421 | ENST00000612133 | MPP2 | 414.10 | 3.79696E−14 |
chr19 | 42074904 | 42075246 | diffreps_peak_1520673 | 342 | ENST00000597391 | ZNF574 | 3.65 | 0 |
chr19 | 42068476 | 42068580 | diffreps_peak_1520658 | 104 | ENST00000222339 | ZNF574 | 517.40 | 0 |
chr19 | 42070365 | 42071000 | diffreps_peak_1520665 | 635 | ENST00000600245 | ZNF574 | 259.20 | 2.19326E−09 |
chr19 | 43960186 | 43960340 | diffreps_peak_1524267 | 154 | ENST00000251269 | ZNF221 | 388.30 | 2.34701E−13 |
chr20 | 4815101 | 4815123 | diffreps_peak_1809935 | 22 | ENST00000379376 | RASSF2 | 465.80 | 9.99201E−16 |
chr20 | 4798009 | 4798085 | diffreps_peak_1809908 | 76 | ENST00000379376 | RASSF2 | 207.60 | 8.73805E−08 |
