Table 1 Genes differentially expressed (adj.p-value < 0.10 and logFC > 1.5) in senescent cells compared to young in normal glucose levels.
# | Gene_ID | logFC | AveExpr | t | P.Value | Adj.P.Value | B | HGNC_ID | Description | HAGR_DB | SeneQuest_DB |
|---|---|---|---|---|---|---|---|---|---|---|---|
1 | ENSG00000092969 | 4.7564 | 3.6305 | 9.4846 | 0.0000 | 0.0118 | 5.6387 | TGFB2 | transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768] | Over-expressed | U:5; D:1 |
2 | ENSG00000005187 | 3.7810 | 1.5349 | 7.5726 | 0.0000 | 0.0254 | 3.1866 | ACSM3 | acyl-CoA synthetase medium chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522] | NA | U:2; D:0 |
3 | ENSG00000105855 | 2.2509 | 3.8918 | 7.5565 | 0.0000 | 0.0254 | 4.0563 | ITGB8 | integrin subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:6163] | NA | U:3; D:2 |
4 | ENSG00000079616 | −1.5695 | 5.6850 | −7.5080 | 0.0000 | 0.0254 | 4.1239 | KIF22 | kinesin family member 22 [Source:HGNC Symbol;Acc:HGNC:6391] | Under-expressed | U:0; D:5 |
5 | ENSG00000157601 | 3.5772 | 4.3326 | 7.4619 | 0.0000 | 0.0254 | 3.9681 | MX1 | MX dynamin like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532] | Over-expressed | U:4; D:0 |
6 | ENSG00000144554 | −2.0280 | 4.3566 | −7.4045 | 0.0000 | 0.0254 | 3.9519 | FANCD2 | FA complementation group D2 [Source:HGNC Symbol;Acc:HGNC:3585] | Under-expressed | U:2; D:7 |
7 | ENSG00000185745 | 4.2406 | 0.9891 | 6.5060 | 0.0000 | 0.0606 | 1.9589 | IFIT1 | interferon induced protein with tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:5407] | Over-expressed | U:2; D:1 |
8 | ENSG00000144712 | −1.8628 | 2.8348 | −6.4925 | 0.0000 | 0.0606 | 2.7076 | CAND2 | cullin associated and neddylation dissociated 2 (putative) [Source:HGNC Symbol;Acc:HGNC:30689] | NA | U:1; D:1 |
9 | ENSG00000138675 | 3.4917 | 2.7006 | 6.4308 | 0.0000 | 0.0606 | 2.4552 | FGF5 | fibroblast growth factor 5 [Source:HGNC Symbol;Acc:HGNC:3683] | NA | U:2; D:1 |
10 | ENSG00000165072 | 4.8361 | 2.7871 | 6.4243 | 0.0000 | 0.0606 | 2.3163 | MAMDC2 | MAM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23673] | Over-expressed | U:2; D:0 |
11 | ENSG00000141449 | 3.5485 | 2.3757 | 6.3410 | 0.0000 | 0.0623 | 2.3068 | GREB1L | GREB1 like retinoic acid receptor coactivator [Source:HGNC Symbol;Acc:HGNC:31042] | NA | U:0; D:1 |
12 | ENSG00000105426 | 1.7894 | 5.8019 | 6.2349 | 0.0000 | 0.0669 | 2.4319 | PTPRS | protein tyrosine phosphatase receptor type S [Source:HGNC Symbol;Acc:HGNC:9681] | NA | U:1; D:1 |
13 | ENSG00000105825 | 4.9582 | 6.2532 | 6.1551 | 0.0000 | 0.0696 | 2.3023 | TFPI2 | tissue factor pathway inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11761] | NA | U:3; D:2 |
14 | ENSG00000067048 | −5.2633 | −0.8843 | −6.0557 | 0.0001 | 0.0712 | 0.5763 | DDX3Y | DEAD-box helicase 3 Y-linked [Source:HGNC Symbol;Acc:HGNC:2699] | NA | U:1; D:2 |
15 | ENSG00000137193 | −2.1836 | 3.1077 | −6.0356 | 0.0001 | 0.0712 | 2.0950 | PIM1 | Pim-1 proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:8986] | Under-expressed | U:7; D:2 |
16 | ENSG00000115896 | 2.0854 | 3.7362 | 6.0024 | 0.0001 | 0.0712 | 2.0557 | PLCL1 | phospholipase C like 1 (inactive) [Source:HGNC Symbol;Acc:HGNC:9063] | NA | U:1; D:1 |
17 | ENSG00000149212 | 2.3423 | 3.4360 | 5.9643 | 0.0001 | 0.0712 | 1.9926 | SESN3 | sestrin 3 [Source:HGNC Symbol;Acc:HGNC:23060] | NA | U:2; D:0 |
18 | ENSG00000167772 | 4.2680 | 4.5042 | 5.8609 | 0.0001 | 0.0743 | 1.8559 | ANGPTL4 | angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039] | Over-expressed | U:7; D:1 |
19 | ENSG00000172738 | 2.7465 | 3.2557 | 5.7940 | 0.0001 | 0.0743 | 1.7296 | TMEM217 | transmembrane protein 217 [Source:HGNC Symbol;Acc:HGNC:21238] | Over-expressed | U:1; D:0 |
20 | ENSG00000067646 | −4.9956 | −2.4558 | −5.7418 | 0.0001 | 0.0743 | −0.5138 | ZFY | zinc finger protein Y-linked [Source:HGNC Symbol;Acc:HGNC:12870] | NA | NA |
21 | ENSG00000138623 | 2.7519 | 1.4124 | 5.6953 | 0.0001 | 0.0743 | 1.3690 | SEMA7A | semaphorin 7A (John Milton Hagen blood group) [Source:HGNC Symbol;Acc:HGNC:10741] | NA | U:2; D:2 |
22 | ENSG00000066735 | −3.0296 | 2.9913 | −5.6590 | 0.0001 | 0.0743 | 1.5641 | KIF26A | kinesin family member 26A [Source:HGNC Symbol;Acc:HGNC:20226] | NA | U:1; D:2 |
23 | ENSG00000145242 | 4.5827 | 1.3860 | 5.6230 | 0.0001 | 0.0743 | 0.9377 | EPHA5 | EPH receptor A5 [Source:HGNC Symbol;Acc:HGNC:3389] | NA | NA |
24 | ENSG00000026103 | 1.8381 | 3.8246 | 5.6224 | 0.0001 | 0.0743 | 1.5320 | FAS | Fas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920] | Over-expressed | U:4; D:1 |
25 | ENSG00000189056 | 4.9245 | 3.4932 | 5.6037 | 0.0001 | 0.0743 | 1.4219 | RELN | reelin [Source:HGNC Symbol;Acc:HGNC:9957] | NA | U:0; D:1 |
26 | ENSG00000164484 | 3.0426 | 2.0086 | 5.6013 | 0.0001 | 0.0743 | 1.2714 | TMEM200A | transmembrane protein 200A [Source:HGNC Symbol;Acc:HGNC:21075] | NA | U:1; D:0 |
27 | ENSG00000165246 | −5.5321 | −2.3438 | −5.5977 | 0.0001 | 0.0743 | −0.5528 | NLGN4Y | neuroligin 4 Y-linked [Source:HGNC Symbol;Acc:HGNC:15529] | NA | NA |
28 | ENSG00000119669 | −1.7321 | 6.2914 | −5.5917 | 0.0001 | 0.0743 | 1.4829 | IRF2BPL | interferon regulatory factor 2 binding protein like [Source:HGNC Symbol;Acc:HGNC:14282] | NA | U:1; D:1 |
29 | ENSG00000163071 | 1.5607 | 3.9695 | 5.5669 | 0.0001 | 0.0743 | 1.4508 | SPATA18 | spermatogenesis associated 18 [Source:HGNC Symbol;Acc:HGNC:29579] | Over-expressed | U:4; D:0 |
30 | ENSG00000147459 | 1.5019 | 5.5256 | 5.5435 | 0.0001 | 0.0743 | 1.4137 | DOCK5 | dedicator of cytokinesis 5 [Source:HGNC Symbol;Acc:HGNC:23476] | NA | U:0; D:1 |
31 | ENSG00000066248 | 5.8635 | −0.3949 | 5.5192 | 0.0001 | 0.0743 | −0.2762 | NGEF | neuronal guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:7807] | NA | U:1; D:2 |
32 | ENSG00000178726 | 2.0545 | 6.0271 | 5.5139 | 0.0001 | 0.0743 | 1.3684 | THBD | thrombomodulin [Source:HGNC Symbol;Acc:HGNC:11784] | NA | U:5; D:2 |
33 | ENSG00000163808 | −1.9526 | 3.6393 | −5.4162 | 0.0002 | 0.0800 | 1.2267 | KIF15 | kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273] | Under-expressed | U:0; D:5 |
34 | ENSG00000170430 | −2.9235 | 1.2568 | −5.4140 | 0.0002 | 0.0800 | 0.9960 | MGMT | O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059] | Under-expressed | NA |
35 | ENSG00000135074 | 1.5278 | 6.1145 | 5.4140 | 0.0002 | 0.0800 | 1.2119 | ADAM19 | ADAM metallopeptidase domain 19 [Source:HGNC Symbol;Acc:HGNC:197] | Over-expressed | U:2; D:0 |
36 | ENSG00000089127 | 2.4090 | 3.2450 | 5.3647 | 0.0002 | 0.0821 | 1.1398 | OAS1 | 2’-5’-oligoadenylate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:8086] | NA | U:3; D:0 |
37 | ENSG00000101311 | 2.0626 | 3.1539 | 5.3319 | 0.0002 | 0.0844 | 1.0810 | FERMT1 | FERM domain containing kindlin 1 [Source:HGNC Symbol;Acc:HGNC:15889] | NA | U:1; D:0 |
38 | ENSG00000126709 | 3.8129 | 4.6387 | 5.2545 | 0.0002 | 0.0933 | 0.9805 | IFI6 | interferon alpha inducible protein 6 [Source:HGNC Symbol;Acc:HGNC:4054] | Over-expressed | U:4; D:1 |
39 | ENSG00000184545 | 2.2951 | 3.4372 | 5.2215 | 0.0002 | 0.0961 | 0.9246 | DUSP8 | dual specificity phosphatase 8 [Source:HGNC Symbol;Acc:HGNC:3074] | NA | U:1; D:0 |
40 | ENSG00000119514 | 2.4543 | 2.6776 | 5.1574 | 0.0002 | 0.0969 | 0.8039 | GALNT12 | polypeptide N-acetylgalactosaminyltransferase 12 [Source:HGNC Symbol;Acc:HGNC:19877] | NA | U:3; D:1 |
41 | ENSG00000171346 | 2.1039 | 3.0590 | 5.1547 | 0.0002 | 0.0969 | 0.8167 | KRT15 | keratin 15 [Source:HGNC Symbol;Acc:HGNC:6421] | NA | U:1; D:0 |
42 | ENSG00000185507 | 1.7958 | 3.9681 | 5.1542 | 0.0002 | 0.0969 | 0.8260 | IRF7 | interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122] | NA | U:5; D:1 |
43 | ENSG00000113368 | −1.5113 | 6.3069 | −5.1485 | 0.0002 | 0.0969 | 0.7895 | LMNB1 | lamin B1 [Source:HGNC Symbol;Acc:HGNC:6637] | Under-expressed | U:4; D:33 |
44 | ENSG00000156113 | 3.7668 | 3.6239 | 5.1414 | 0.0002 | 0.0969 | 0.7966 | KCNMA1 | potassium calcium-activated channel subfamily M alpha 1 [Source:HGNC Symbol;Acc:HGNC:6284] | NA | U:1; D:1 |
45 | ENSG00000154262 | 2.7302 | 3.8470 | 5.1331 | 0.0002 | 0.0969 | 0.7939 | ABCA6 | ATP binding cassette subfamily A member 6 [Source:HGNC Symbol;Acc:HGNC:36] | NA | U:1; D:1 |
46 | ENSG00000186918 | −2.3673 | 2.3481 | −5.1207 | 0.0003 | 0.0969 | 0.7447 | ZNF395 | zinc finger protein 395 [Source:HGNC Symbol;Acc:HGNC:18737] | NA | U:1; D:3 |
47 | ENSG00000115194 | −2.5308 | 1.5416 | −5.1075 | 0.0003 | 0.0970 | 0.6628 | SLC30A3 | solute carrier family 30 member 3 [Source:HGNC Symbol;Acc:HGNC:11014] | NA | U:0; D:1 |
48 | ENSG00000147697 | 1.9285 | 3.1885 | 5.0923 | 0.0003 | 0.0975 | 0.7268 | GSDMC | gasdermin C [Source:HGNC Symbol;Acc:HGNC:7151] | NA | NA |