Table 1 Genes differentially expressed (adj.p-value < 0.10 and logFC > 1.5) in senescent cells compared to young in normal glucose levels.

From: Replicative senescence and high glucose induce the accrual of self-derived cytosolic nucleic acids in human endothelial cells

#

Gene_ID

logFC

AveExpr

t

P.Value

Adj.P.Value

B

HGNC_ID

Description

HAGR_DB

SeneQuest_DB

1

ENSG00000092969

4.7564

3.6305

9.4846

0.0000

0.0118

5.6387

TGFB2

transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]

Over-expressed

U:5; D:1

2

ENSG00000005187

3.7810

1.5349

7.5726

0.0000

0.0254

3.1866

ACSM3

acyl-CoA synthetase medium chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]

NA

U:2; D:0

3

ENSG00000105855

2.2509

3.8918

7.5565

0.0000

0.0254

4.0563

ITGB8

integrin subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:6163]

NA

U:3; D:2

4

ENSG00000079616

−1.5695

5.6850

−7.5080

0.0000

0.0254

4.1239

KIF22

kinesin family member 22 [Source:HGNC Symbol;Acc:HGNC:6391]

Under-expressed

U:0; D:5

5

ENSG00000157601

3.5772

4.3326

7.4619

0.0000

0.0254

3.9681

MX1

MX dynamin like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532]

Over-expressed

U:4; D:0

6

ENSG00000144554

−2.0280

4.3566

−7.4045

0.0000

0.0254

3.9519

FANCD2

FA complementation group D2 [Source:HGNC Symbol;Acc:HGNC:3585]

Under-expressed

U:2; D:7

7

ENSG00000185745

4.2406

0.9891

6.5060

0.0000

0.0606

1.9589

IFIT1

interferon induced protein with tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:5407]

Over-expressed

U:2; D:1

8

ENSG00000144712

−1.8628

2.8348

−6.4925

0.0000

0.0606

2.7076

CAND2

cullin associated and neddylation dissociated 2 (putative) [Source:HGNC Symbol;Acc:HGNC:30689]

NA

U:1; D:1

9

ENSG00000138675

3.4917

2.7006

6.4308

0.0000

0.0606

2.4552

FGF5

fibroblast growth factor 5 [Source:HGNC Symbol;Acc:HGNC:3683]

NA

U:2; D:1

10

ENSG00000165072

4.8361

2.7871

6.4243

0.0000

0.0606

2.3163

MAMDC2

MAM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23673]

Over-expressed

U:2; D:0

11

ENSG00000141449

3.5485

2.3757

6.3410

0.0000

0.0623

2.3068

GREB1L

GREB1 like retinoic acid receptor coactivator [Source:HGNC Symbol;Acc:HGNC:31042]

NA

U:0; D:1

12

ENSG00000105426

1.7894

5.8019

6.2349

0.0000

0.0669

2.4319

PTPRS

protein tyrosine phosphatase receptor type S [Source:HGNC Symbol;Acc:HGNC:9681]

NA

U:1; D:1

13

ENSG00000105825

4.9582

6.2532

6.1551

0.0000

0.0696

2.3023

TFPI2

tissue factor pathway inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11761]

NA

U:3; D:2

14

ENSG00000067048

−5.2633

−0.8843

−6.0557

0.0001

0.0712

0.5763

DDX3Y

DEAD-box helicase 3 Y-linked [Source:HGNC Symbol;Acc:HGNC:2699]

NA

U:1; D:2

15

ENSG00000137193

−2.1836

3.1077

−6.0356

0.0001

0.0712

2.0950

PIM1

Pim-1 proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:8986]

Under-expressed

U:7; D:2

16

ENSG00000115896

2.0854

3.7362

6.0024

0.0001

0.0712

2.0557

PLCL1

phospholipase C like 1 (inactive) [Source:HGNC Symbol;Acc:HGNC:9063]

NA

U:1; D:1

17

ENSG00000149212

2.3423

3.4360

5.9643

0.0001

0.0712

1.9926

SESN3

sestrin 3 [Source:HGNC Symbol;Acc:HGNC:23060]

NA

U:2; D:0

18

ENSG00000167772

4.2680

4.5042

5.8609

0.0001

0.0743

1.8559

ANGPTL4

angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]

Over-expressed

U:7; D:1

19

ENSG00000172738

2.7465

3.2557

5.7940

0.0001

0.0743

1.7296

TMEM217

transmembrane protein 217 [Source:HGNC Symbol;Acc:HGNC:21238]

Over-expressed

U:1; D:0

20

ENSG00000067646

−4.9956

−2.4558

−5.7418

0.0001

0.0743

−0.5138

ZFY

zinc finger protein Y-linked [Source:HGNC Symbol;Acc:HGNC:12870]

NA

NA

21

ENSG00000138623

2.7519

1.4124

5.6953

0.0001

0.0743

1.3690

SEMA7A

semaphorin 7A (John Milton Hagen blood group) [Source:HGNC Symbol;Acc:HGNC:10741]

NA

U:2; D:2

22

ENSG00000066735

−3.0296

2.9913

−5.6590

0.0001

0.0743

1.5641

KIF26A

kinesin family member 26A [Source:HGNC Symbol;Acc:HGNC:20226]

NA

U:1; D:2

23

ENSG00000145242

4.5827

1.3860

5.6230

0.0001

0.0743

0.9377

EPHA5

EPH receptor A5 [Source:HGNC Symbol;Acc:HGNC:3389]

NA

NA

24

ENSG00000026103

1.8381

3.8246

5.6224

0.0001

0.0743

1.5320

FAS

Fas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920]

Over-expressed

U:4; D:1

25

ENSG00000189056

4.9245

3.4932

5.6037

0.0001

0.0743

1.4219

RELN

reelin [Source:HGNC Symbol;Acc:HGNC:9957]

NA

U:0; D:1

26

ENSG00000164484

3.0426

2.0086

5.6013

0.0001

0.0743

1.2714

TMEM200A

transmembrane protein 200A [Source:HGNC Symbol;Acc:HGNC:21075]

NA

U:1; D:0

27

ENSG00000165246

−5.5321

−2.3438

−5.5977

0.0001

0.0743

−0.5528

NLGN4Y

neuroligin 4 Y-linked [Source:HGNC Symbol;Acc:HGNC:15529]

NA

NA

28

ENSG00000119669

−1.7321

6.2914

−5.5917

0.0001

0.0743

1.4829

IRF2BPL

interferon regulatory factor 2 binding protein like [Source:HGNC Symbol;Acc:HGNC:14282]

NA

U:1; D:1

29

ENSG00000163071

1.5607

3.9695

5.5669

0.0001

0.0743

1.4508

SPATA18

spermatogenesis associated 18 [Source:HGNC Symbol;Acc:HGNC:29579]

Over-expressed

U:4; D:0

30

ENSG00000147459

1.5019

5.5256

5.5435

0.0001

0.0743

1.4137

DOCK5

dedicator of cytokinesis 5 [Source:HGNC Symbol;Acc:HGNC:23476]

NA

U:0; D:1

31

ENSG00000066248

5.8635

−0.3949

5.5192

0.0001

0.0743

−0.2762

NGEF

neuronal guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:7807]

NA

U:1; D:2

32

ENSG00000178726

2.0545

6.0271

5.5139

0.0001

0.0743

1.3684

THBD

thrombomodulin [Source:HGNC Symbol;Acc:HGNC:11784]

NA

U:5; D:2

33

ENSG00000163808

−1.9526

3.6393

−5.4162

0.0002

0.0800

1.2267

KIF15

kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]

Under-expressed

U:0; D:5

34

ENSG00000170430

−2.9235

1.2568

−5.4140

0.0002

0.0800

0.9960

MGMT

O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]

Under-expressed

NA

35

ENSG00000135074

1.5278

6.1145

5.4140

0.0002

0.0800

1.2119

ADAM19

ADAM metallopeptidase domain 19 [Source:HGNC Symbol;Acc:HGNC:197]

Over-expressed

U:2; D:0

36

ENSG00000089127

2.4090

3.2450

5.3647

0.0002

0.0821

1.1398

OAS1

2’-5’-oligoadenylate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:8086]

NA

U:3; D:0

37

ENSG00000101311

2.0626

3.1539

5.3319

0.0002

0.0844

1.0810

FERMT1

FERM domain containing kindlin 1 [Source:HGNC Symbol;Acc:HGNC:15889]

NA

U:1; D:0

38

ENSG00000126709

3.8129

4.6387

5.2545

0.0002

0.0933

0.9805

IFI6

interferon alpha inducible protein 6 [Source:HGNC Symbol;Acc:HGNC:4054]

Over-expressed

U:4; D:1

39

ENSG00000184545

2.2951

3.4372

5.2215

0.0002

0.0961

0.9246

DUSP8

dual specificity phosphatase 8 [Source:HGNC Symbol;Acc:HGNC:3074]

NA

U:1; D:0

40

ENSG00000119514

2.4543

2.6776

5.1574

0.0002

0.0969

0.8039

GALNT12

polypeptide N-acetylgalactosaminyltransferase 12 [Source:HGNC Symbol;Acc:HGNC:19877]

NA

U:3; D:1

41

ENSG00000171346

2.1039

3.0590

5.1547

0.0002

0.0969

0.8167

KRT15

keratin 15 [Source:HGNC Symbol;Acc:HGNC:6421]

NA

U:1; D:0

42

ENSG00000185507

1.7958

3.9681

5.1542

0.0002

0.0969

0.8260

IRF7

interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122]

NA

U:5; D:1

43

ENSG00000113368

−1.5113

6.3069

−5.1485

0.0002

0.0969

0.7895

LMNB1

lamin B1 [Source:HGNC Symbol;Acc:HGNC:6637]

Under-expressed

U:4; D:33

44

ENSG00000156113

3.7668

3.6239

5.1414

0.0002

0.0969

0.7966

KCNMA1

potassium calcium-activated channel subfamily M alpha 1 [Source:HGNC Symbol;Acc:HGNC:6284]

NA

U:1; D:1

45

ENSG00000154262

2.7302

3.8470

5.1331

0.0002

0.0969

0.7939

ABCA6

ATP binding cassette subfamily A member 6 [Source:HGNC Symbol;Acc:HGNC:36]

NA

U:1; D:1

46

ENSG00000186918

−2.3673

2.3481

−5.1207

0.0003

0.0969

0.7447

ZNF395

zinc finger protein 395 [Source:HGNC Symbol;Acc:HGNC:18737]

NA

U:1; D:3

47

ENSG00000115194

−2.5308

1.5416

−5.1075

0.0003

0.0970

0.6628

SLC30A3

solute carrier family 30 member 3 [Source:HGNC Symbol;Acc:HGNC:11014]

NA

U:0; D:1

48

ENSG00000147697

1.9285

3.1885

5.0923

0.0003

0.0975

0.7268

GSDMC

gasdermin C [Source:HGNC Symbol;Acc:HGNC:7151]

NA

NA

  1. logFC log2 of fold change between two compared groups, AveExpr average log2 expression level for a gene across all compared samples, t modareted t-statistics, P.Value and Adj.P.Value nominal and corrected for multiple testing (with Benjamini and Hochberg’s method) p-values respectively, B log-odds that the gene is differentially expressed B-statistics, HGNC_ID, Description descriptive gene name, HAGR_DB if the gene is included in HAGR CellAge signature and eventually what is the direction of expression change assciated with senescence, SeneQuest if the gene is present in SeneQuest database and eventually the number of studies reporting it’s (U) up- and (D) down-regulated status.