Fig. 1: Extensive variation pattern of DNA methylation in a natural population. | Cell Research

Fig. 1: Extensive variation pattern of DNA methylation in a natural population.

From: Population-wide DNA methylation polymorphisms at single-nucleotide resolution in 207 cotton accessions reveal epigenomic contributions to complex traits

Fig. 1

a Workflow of the multiple-omics association. The bottom panel refers to the definition of SMP. b An example of genomic regions exhibiting DNA methylation diversity among different accessions. Each track represents a distinct accession. c 3D plot illustrating the diversity of DNA methylation among different accessions. d The correlation among three different DNA methylation contexts. e Bar plot demonstrating the number and portion of SMP with MAF greater than 0.5. f Density plot showing MAF distributions for CG, CHG, CHH-SMPs and SNPs. g, h Box plots showing the distribution of MAFs of SMP (g) and SNP (h) for CG sites across different genomic features. i Comparison of LD decay among different DNA methylation contexts (vertical axis: LD level; horizontal axis: pairwise distance).

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