Fig. 3

Similar transcriptomic profiles of TNFα-exposed and nonexposed CD34−CD7+ late T-cell progenitors. A PCA after RNA sequencing of sorted CB or mPB HSPC-derived CD34+CD7+ and CD34−CD7+ progenitors after 7 days of DL-4 culture. Each point represents a replicate sample. B A heat map representing the gene expression profile for the cell cycle pathway among CD34−CD7+ progenitors generated from CB HSPCs. C, D GSEA of RNA-seq data obtained from CD34−CD7+ cells generated in the presence or absence of TNFα. C The 16 pathways (out of 20) with the highest normalized enrichment scores (all p < 0.01) and D their corresponding GSEA plots, showing the enrichment profile