Abstract
Geninthiocin is a thiopeptide with 35-membered macrocyclic core moiety. It has potent anti-Gram-positive (G+) bacteria activity. Herein, we reported two new congeners (2-3) of geninthiocin (geninthiocin A, 1) from Streptomyces sp. CPCC 200267, and designated them as geninthiocins C and D, whose structures were determined by NMR. Geninthiocins A, C and D had the same 35-membered macrocyclic core moiety, but possessed a -Dha-Dha-NH2, -Dha-Ala-NH2, and -NH2 tail, respectively. Besides, the Ala residue in geninthiocin C was determined as l- configuration by C3 Marfey’s method. In vitro assays indicated that geninthiocins C-D showed no antibacterial activity, in contrast to the potent anti-G+ bacteria activity displayed by geninthiocin A. Therefore, the -Dha-Dha-NH2 tail of geninthiocin A played an important role in its potent activity against G+ bacteria.
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References
Bagley MC, Dale JW, Merritt EA, Xiong X. Thiopeptide antibiotics. Chem Rev. 2005;105:685–714.
Just-Baringo X, Albericio F, Álvarez M. Thiopeptide engineering: a multidisciplinary effort towards future drugs. Angew Chem Int Ed. 2014;53:6602–16.
LaMarche MJ, et al. Discovery of LFF571: an investigational agent for Clostridium difficile infection. J Med Chem. 2012;6:2376–87.
Lau RC, Rinehart KL. Berninamycins B, C, and D, minor metabolites from Streptomyces bernensis. J Antibiot. 1994;47:1466–72.
Engelhardt K, et al. Production of a new thiopeptide antibiotic, TP-1161, by a marine Nocardiopsis species. Appl Environ Microbiol. 2010;76:4969–76.
Yun BS, Hidaka T, Furihata K, Seto H. Microbial metabolites with tipA promoter inducing activity. II. Geninthiocin, a novel thiopeptide produced by Streptomyces sp. DD84. J Antibiot. 1994;47:969–75.
Palomo S, et al. Sponge-derived Kocuria and Micrococcus spp. as sources of the new thiazolyl peptide antibiotic kocurin. Mar Drugs. 2013;11:1071–86.
Just-Baringo X, et al. Dissecting the structure of thiopeptides: assessment of thiazoline and tail moieties of baringolin and antibacterial activity optimization. J Med Chem. 2014;57:4185–95.
LaMarche MJ, et al. Antibiotic optimization and chemical structure stabilization of thiomuracin A. J Med Chem. 2012;55:6934–41.
Xu L, et al. Synthesis and antibacterial activity of novel water-soluble nocathiacin analogs. Bioorg Med Chem Lett. 2013;23:366–9.
Luo X, et al. Recombinant thiopeptides containing noncanonical amino acids. Proc Natl Acad Sci USA. 2016;113:3615–20.
Just-Baringo X, Albericio F, Álvarez M. Thiopeptide antibiotics: retrospective and recent advances. Mar Drugs. 2014;12:317–51.
Sajid I, et al. Val-geninthiocin: structure elucidation and MSn fragmentation of thiopeptide antibiotics produced by Streptomyces sp. RSF18. Z Naturforsch. 2008;63b:1223–30.
Vijayasarathy S, et al. C3 and 2D C3 Marfey’s methods for amino acid analysis in natural products. J Nat Prod. 2016;79:421–7.
Clinical and Laboratory Standards Institute. Performance Standards for Antimicrobial Susceptibility Testing. Twenty-seventh informational supplement, Clinical and Laboratory Standards Institute (CLSI). Wayne, PA; 2017. M100-S27.
Clinical and Laboratory Standards Institute. Methods for Dilution Antimicrobial Susceptibility Tests for Bacteria That Grow Aerobically. Clinical and Laboratory Standards Institute (CLSI). Wayne, PA; 2015. M07-A10.
Ebata M, Miyazaki K, Otsuka H. Studies on siomycin. I. Physicochemical properties of siomycins A, B and C. J Antibiot. 1969;22:364–8.
Naidu BN, et al. Synthesis and antibacterial activity of nocathiacin I analogues. Bioorg Med Chem Lett. 2006;16:3545–9.
Connolly TP, et al. Chemical conversion of nocathiacin I to nocathiacin II and a lactone analogue of glycothiohexide alpha. J Nat Prod. 2005;68:550–3.
Schoof S, Baumann S, Ellinger B, Arndt HD. A fluorescent probe for the 70S-ribosomal GTPase-associated center. Chembiochem. 2009;10:242–5.
Acknowledgements
We gratefully acknowledge Nuclear Magnetic Resonance Center (Institute of Materia Medica, CAMS & PUMC) and Analytical Center of Drugs (Institute of Medicinal Biotechnology, CAMS & PUMC) for the NMR and MS analyses. This work was supported by CAMS Initiative for Innovative Medicine (CAMS-I2M-3-012) and National Infrastructure of Microbial Resources (No. NIMR-2018-3).
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Li, S., Hu, X., Li, L. et al. Geninthiocins C and D from Streptomyces as 35-membered macrocyclic thiopeptides with modified tail moiety. J Antibiot 72, 106–110 (2019). https://doi.org/10.1038/s41429-018-0127-y
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DOI: https://doi.org/10.1038/s41429-018-0127-y
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