Abstract
A novel actinomycete, designated as NUM-3379T, was isolated from seeds of Anabasis brevifolia collected from Urgun Soum, Dornogovi Province, Mongolia. The cells of the strain were aerobic, Gram-positive, motile, non-spore-forming, and coccus-shaped. 16S rRNA gene sequence analysis indicated that strain NUM-3379T belonged to the genus Kineococcus and showed the highest similarity to Kineococcus glutinatus DSM 26692T and Kineococcus xinjiangensis DSM 22857T, with both sharing 98.87% sequence similarity. The chemotaxonomic characteristics of the strain NUM-3379T were consistent with those of the genus Kineococcus. The diagnostic diamino acid for peptidoglycans was meso-diaminopimelic acid. The whole-cell sugars included glucose, galactose, mannose, and arabinose. The major menaquinone was MK-9(H2). The polar lipid profile was comprised of phosphatidylglycerol, diphosphatidylglycerol, and two unidentified phospholipids. The major fatty acids were anteiso-C15:0 and iso-C17:0 3-OH. In contrast, digital DNA–DNA hybridization and average nucleotide identity values revealed low relatedness between strain NUM-3379T and other type strains of the genus Kineococcus. Furthermore, strain NUM-3379T exhibited several phenotypic properties that distinguished it from other closely related species. Based on the genotypic and phenotypic data, strain NUM-3379T represents a novel species within the genus Kineococcus, for which the name Kineococcus anabasis sp. nov. is proposed. The type strain is NUM-3379T (=NBRC 117252T = TBRC 21100T).
This is a preview of subscription content, access via your institution
Access options
Subscribe to this journal
Receive 12 print issues and online access
$259.00 per year
only $21.58 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to the full article PDF.
USD 39.95
Prices may be subject to local taxes which are calculated during checkout



Similar content being viewed by others
References
Yokota A, Tamura T, Nishii T, Hasegawa T. Kineococcus aurantiacus gen. nov., sp. nov., a new aerobic, gram-positive, motile coccus with meso-diaminopimelic acid and arabinogalactan in the cell wall. Int J Syst Evol Microbiol. 1993;43:52–7.
Zhi XY, Li WJ, Stackebrandt E. An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol. 2009;59:589–608.
Lee D, Jang JH, Cha S, Seo T. Thalassiella azotovora gen. nov., sp. nov., a new member of the family Kineosporiaceae isolated from sea water in South Korea. Curr Microbiol. 2016;73:676–83.
Normand P, Benson DR. Kineococcus. In: Whitman WB, Rainey F, Kämpfer P, Trujillo M, et al. editors. Bergey’s Manual of Systematics of Archaea and Bacteria. Hoboken (NJ): John Wiley & Sons. 2015.
Lee SD. Kineococcus rhizosphaerae sp. nov., isolated from rhizosphere soil. Int J Syst Evol Microbiol. 2009;59:2204–7.
Liu M, Peng F, Wang Y, Zhang K, Chen G, Fang C. Kineococcus xinjiangensis sp. nov., isolated from desert sand. Int J Syst Evol Microbiol. 2009;59:1090–3.
Nie GX, Ming H, Zhang J, Feng HG, Li S, Yu TT, et al. Kineococcus glutineturens sp. nov., isolated from soil in Yunnan, south-west China. Antonie van Leeuwenhoek. 2012;102:239–46.
Molina-Menor E, Gimeno-Valero H, Pascual J, Peretó J, Porcar M. Kineococcus vitellinus sp. nov., Kineococcus indalonis sp. nov. and Kineococcus siccus sp. nov., Isolated nearby the Tabernas Desert (Almería, Spain). Microorganisms. 2020;8:1547.
Phillips RW, Wiegel J, Berry CJ, Fliermans C, Peacock AD, White DC, et al. Kineococcus radiotolerans sp. nov., a radiation-resistant, Gram-positive bacterium. Int J Syst Evol Microbiol. 2002;52:933–8.
Duangmal K, Thamchaipenet A, Ara I, Matsumoto A, Takahashi Y. Kineococcus gynurae sp. nov., isolated from a Thai medicinal plant. Int J Syst Evol Microbiol. 2008;58:2439–42.
Bian GK, Feng ZZ, Qin S, Xing K, Wang Z, Cao CL, et al. Kineococcus endophytica sp. nov., a novel endophytic actinomycete isolated from a coastal halophyte in Jiangsu, China. Antonie van Leeuwenhoek. 2012;102:621–8.
Thanompreechachai J, Butdee W, Chantavorakit T, Suriyachadkun C, Duangmal K. Kineococcus halophytocola sp. nov., isolated from leaves of halophyte Sesuvium portulacastrum L. Curr Microbiol. 2025;82:92.
Li Q, Li G, Chen X, Xu F, Li Y, Xu L, et al. Kineococcus gypseus sp. nov., isolated from saline sediment. Int J Syst Evol Microbiol. 2015;65:3703–8.
Duangmal K, Muangham S, Mingma R, Yimyai T, Srisuk N, Kitpreechavanich V, et al. Kineococcus mangrovi sp. nov., isolated from mangrove sediment. Int J Syst Evol Microbiol. 2016;66:1230–5.
Xu FJ, Li QY, Li GD, Chen X, Jiang Y, Jiang CL. Kineococcus terrestris sp. nov. and Kineococcus aureolus sp. nov., isolated from saline sediment. Int J Syst Evol Microbiol. 2017;67:4801–7.
Mhatre S, Singh NK, Wood JM, Parker CW, Pukall R, Verbarg S, et al. Description of chloramphenicol resistant Kineococcus rubinsiae sp. nov. isolated from a spacecraft assembly facility. Front Microbiol. 2020;11:1957.
Jigjidsuren S, Johnson DA. Forage plants in Mongolia. Admon. 2003;387:99929–0. ISBN-158-6.
Grubov VI. Key to the vascular plants of Mongolia. Science Publishers. 2001;116:99927–62. ISBN51-8.
Amtaghri S, Slaoui M, Eddouks M. The genus Anabasis: a review on pharmacological and phytochemical properties. Cardiovasc Hematol Agents Med Chem. 2025;23:11–28.
Hayakawa M, Nonomura H. Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J Ferment Technol. 1987;65:501–9.
Zhu H, Qu F, Zhu LH. Isolation of genomic DNAs from plants, fungi and bacteria using benzyl chloride. Nucleic Acids Res. 1993;21:5279–80.
Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol. 1991;173:697–703.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990;215:403–10.
Tamura K, Stecher G, Kumar S. MEGA11: molecular evolutionary genetics analysis version 11. Mol Biol Evol. 2021;38:3022.
Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406–25.
Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol. 1981;17:368–76.
Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool. 1971;20:406–16.
Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 1980;16:111–20.
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 1985;39:783–91.
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008;18:821–9.
Zerbino DR, McEwen GK, Margulies EH, Birney E. Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler. PLoS One. 2009;4:e8407.
Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W. Scaffolding pre-assembled contigs using SSPACE. Bioinformatics. 2011;27:578–9.
Boetzer M, Pirovano W. Toward almost closed genomes with GapFiller. Genome Biol. 2012;13:R56.
Hunt M, Newbold C, Berriman M, Otto TD. A comprehensive evaluation of assembly scaffolding tools. Genome Biol. 2014;15:R42.
Blin K, Shaw S, Vader L, Szenei J, Reitz ZL, Augustijn HE, et al. antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation. Nucleic Acids Res. 2025;53:W32–W38.
Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics. 2013;14:60.
Yoon SH, Ha SM, Lim J, Kwon S, Chun J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie van Leeuwenhoek. 2017;110:1281–6.
Meier-Kolthoff JP, Göker M. TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy. Nat Commun. 2019;10:2182.
Lefort V, Desper R, Gascuel O. FastME 2.0: a comprehensive, accurate, and fast distance-based phylogeny inference program. Mol Biol Evol. 2015;32:2798–800.
Waksman SA. The Actinomycetes: a summary of current knowledge. New York: Ronald Press; 1967.
Waksman SA. The Actinomycetes, Vol. II, Classification, identification and descriptions of genera and species. Baltimore (MD): Williams & Wilkins; 1961.
Degryse E, Glansdorff N, Piérard A. A comparative analysis of extreme thermophilic bacteria belonging to the genus Thermus. Arch Microbiol. 1978;117:189–96.
Staneck JL, Roberts GD. Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol. 1974;28:226–31.
Hamada M, Yamamura H, Komukai C, Tamura T, Suzuki K, Hayakawa M. Luteimicrobium album sp. nov., a novel actinobacterium isolated from a lichen collected in Japan, and emended description of the genus Luteimicrobium. J Antibiot. 2012;65:427–31.
Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods. 1984;2:233–41.
Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. Newark (DE): MIDI Inc; MIDI Technical Note 101. 1990.
Ohnishi Y, Ishikawa J, Hara H, Suzuki H, Ikenoya M, Ikeda H, et al. Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350. J Bacteriol. 2008;190:4050–60.
Lana EJ, Carazza F, Takahashi JA. Antibacterial evaluation of 1,4-benzoquinone derivatives. J Agric Food Chem. 2006;54:2053.
Bartolić M, Matošević A, Maraković N, Novaković I, Sladić D, Žunec S, et al. Assessment of biological activity of low molecular weight 1,4-benzoquinone derivatives. Biomolecules. 2025;15:1162.
Deniz NG, Ibis C, Gokmen Z, Stasevych M, Novikov V, Komarovska-Porokhnyavets O, et al. Design, synthesis, biological evaluation, and antioxidant and cytotoxic activity of heteroatom-substituted 1,4-naphtho- and benzoquinones. Chem Pharm Bull. 2015;63:1029–39.
Wayne LG, Brenner DJ, Colwell RR, Grimount PAD, Kandler O, Krichevsky MI, et al. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol. 1987;37:463.
Auch AF, von Jan M, Klenk HP, Göker M. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci. 2010;2:117–34.
Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA. 2009;106:19126–31.
Chun J, Rainey FA. Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea. Int J Syst Evol Microbiol. 2014;64:316–24.
Acknowledgements
This research was supported in part by the Advanced Research Grant from the National University of Mongolia (grant number P2023-4571), the JICA M-JEED Project (J12A15), JST/JICA SATREPS (JPMJSA1906), and the Honda Foundation of Japan.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare no competing interests.
Additional information
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary information
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Davaapurev, BO., Iizaka, Y., Najima, C. et al. Kineococcus anabasis sp. nov., isolated from seeds of Anabasis brevifolia. J Antibiot (2026). https://doi.org/10.1038/s41429-026-00925-z
Received:
Revised:
Accepted:
Published:
Version of record:
DOI: https://doi.org/10.1038/s41429-026-00925-z


