Table 1 Representative SNPs from linkage disequilibrium regions.
From: Semi-parametric empirical Bayes factor for genome-wide association studies
rsID (Chr) | Absolute value of the estimated effect size \(\left| {\hat \beta _j} \right|\) | P value (rank) | ABF (rank) | SP-EBF (rank) | GENCODE genes |
|---|---|---|---|---|---|
rs10994415 (Chr.10) | 0.271 | 6.97 × 10−10 (1) | 5.53 × 10−8 (1) | 7.14 × 10−4 (6) | ANK3 |
rs9371601 (Chr.6) | 0.143 | 4.33 × 10−9 (4) | 3.76 × 10−7 (4) | 2.25 × 10−4 (1) | SYNE1 |
rs7296288 (Chr.12) | 0.137 | 9.39 × 10−9 (9) | 8.13 × 10−7 (9) | 3.55 × 10−4 (4) | 3.2 kb 3′ of DHH |
rs17138230 (Chr.11) | 0.163 | 4.60 × 10−8 (25) | 3.28 × 10−6 (23) | 4.09 × 10−3 (72) | ODZ4 |
rs736408 (Chr.3) | 0.134 | 2.00 × 10−7 (82) | 1.46 × 10−5 (82) | 5.16 × 10−3 (81) | ITIH3 |
rs6746896 (Chr.2) | 0.127 | 4.20 × 10−7 (98) | 2.85 × 10−5 (98) | 6.85 × 10−3 (93) | 5.1 kb 5′ of LMAN2L |
