Table 1 General characteristics of investigated arrays.

From: A comparison of genotyping arrays

			Content
			Overall	SNPs/INDELs						CNVs	MT
Distributor	Array	ShortName^a		Total	autosomal	X	Y	Exonic	Splice-site
Illumina	Exome V1.1	Exome	242,901	242,682	237,436	5107	139	225,826	2082	0	219
Illumina	Immuno V2	Immuno	252,604	252,603	249,285	2115	1203	6840	280	0	1
Illumina	Cyto12	Cyto12	297,481	296,540	278,181	15,988	2371	5125	21	941	0
Illumina	Core	Core	298,930	298,725	288,675	8107	1943	33,327	5237	0	205
Illumina	DrugDev	DrugDev	475,233	475,035	459,659	13,405	1971	74,732	1025	0	198
Illumina	Onco	Onco	498,315	498,195	483,528	14,355	312	25,602	360	0	120
Illumina	PsychArray	Psych	570,100	569,789	554,577	13,890	1322	266,517	7451	0	311
Affymetrix	Axiom_GW_ASI	Axiom_ASI	630,191	629,957	610,467	17,268	2222	14,598	40	0	234
Illumina	660w-Quad	660w-Quad	652,132	587,527	573,493	14,015	19	11,189	37	64,484	121
Affymetrix	Axiom_GW_CHB	Axiom_CHB	657,615	657,520	632,267	24,273	980	10,283	282	0	95
Affymetrix	Axiom_NL	Axiom_NL	671,222	670,931	647,127	23,033	771	19,760	624	0	291
Affymetrix	Axiom_GW_EUR	Axiom_EUR	674,996	674,897	661,452	13,155	290	16,634	64	0	99
Illumina	OmniExpress	OmniExpress	715,322	715,322	695,789	18,166	1367	23,603	80	0	0
Illumina	GSAv1	GSAv1	618,540	618,406	601,120	16,100	1186	75,481	6231	0	134
Illumina	GSAv3	GSAv3	654,017	652,879	620,686	28,055	4138	75,481	2822	0	1138
Affymetrix	Axiom_LAT	Axiom_LAT	817,614	817,494	791,856	25,403	235	22,977	95	0	120
Affymetrix	Axiom_UKB	Axiom_UKB	845,485	845,131	823,234	21,084	813	137,657	4101	0	354
Illumina	CytoSNP850K	Cyto850	850,078	850,078	818,101	30,859	1118	37,793	1025	0	0
Illumina	OmniZhongHua	OmniZH	899,502	899,381	873,429	23,935	2017	23,167	59	0	121
Affymetrix	PMRA	PMRA	920,744	920,520	883,265	37,246	9	77,781	6536	0	224
Affymetrix	PMDA	PMDA	921,664	920,950	857,925	62,577	448	51,811	3337	0	714
Affymetrix	Affy6.0	Affy6.0	933,122	932,711	893,949	37,902	860	8966	33	0	411
Illumina	MultiEthnic-AMR/AFR	Multi_AFR	1,426,177	1,425,533	1,380,255	42,918	2360	357,838	4922	0	644
Illumina	MultiEthnic-EUR/ASN	Multi_EUR	1,474,463	1,473,819	1,432,449	39,772	1598	358,382	5062	0	644
Illumina	MultiEthnic-Global	Global	1,768,335	1,767,356	1,707,340	56,079	3937	399,721	10,325	0	979
Affymetrix	Axiom_GW_PanAFR	Axiom_AFR	2,268,172	2,267,890	2,199,268	65,975	2647	21,954	100	0	282
Illumina	Omni2.5	Omni2.5	2,435,293	2,435,200	2,376,441	57,178	1581	70,425	201	0	93
Illumina	Omni5	Omni5	4,082,393	4,082,109	3,965,887	113,724	2498	128,327	5298	17	267

^aManufacturers’ array names were shortened to improve readability, mostly by compressing population names, or removing version names if irrelevant or superfluous. Four arrays have an acronym as name: the Global Screening Array (GSA, both version), the Precision Medicine Research Array (PMRA), and the Precision Medicine Diversity Array (PMDA).

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Table 1 General characteristics of investigated arrays.

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