Table 1 GWAS loci in COVID-19.

1

1:155066988

C

T*

rs114301457

2.40

Synonymous

EFNA4

[7, 8]

2

1:155175305

G

A*

rs7528026

1.39

Intron

TRIM46

[7, 8]

3

1:155197995

A*

G

rs41264915

1.20

Intron

THBS3

[7, 8]

4

2:60480453

A*

G

rs1123573

1.13

Intron

BCL11A

[7, 8]

5

3:101705614

T*

C

rs11919389

1.02

Downstream

ZBTB11, RPL24, CEP97, NXPE3

[6]

6

3:146517122

G

A*

rs343320

1.25

Missense

PLSCR1

[7, 8]

7

3:45796521

G

T*

rs2271616

1.26

5’UTR

SLC6A20

[7, 8]

3:45823240

T

C*

rs10490770

1.88

Downstream

LZTLF1

[6]

3:45834968

AA

AAA*

rs11385942

1.77

Intron

SLC6A20, LZTFL1, FYCO1, CXCR6, XCR1, and CCR9.

[4]

3:45859597

C

T*

rs73064425

2.71

Intron

LZTLF1

[7, 8]

8

5:131995059

C

T*

rs56162149

1.20

Intron

ACSL6

[7, 8]

9

5:132441275

T

C*

rs10066378

1.20

Intron

IRF1-AS1

[7]

10

6:41534945

A

C*

rs1886814

6.17

eQTL, Intron

FOXP4

[6, 22]

11

6:29831017

A*

G

rs9380142

1.3

3’UTR

HLA-G

[5]

12

6: 32180146

A

G*

rs3131294

1.1

Intron

NOTCH4

[5]

13

6:32623820

T*

C

rs9271609

1.14

Upstream

HLA-DQA1

[7]

14

6:41515007

A*

C

rs2496644

1.45

Intron

LINC01276

[7]

15

8:124324323

T

C*

rs72711165

1.227

Intron

TMEM65

[6]

16

9:133257521

A

C*

rs657152

1.32

Intron

ABO

[4]

9:133274084

C*

T

rs912805253

1.14

eQTL, Intron

ABO

[6, 22]

17

11:34482745

G*

A

rs61882275

1.27

Intron

ELF5

[7, 8]

18

9:21206606

C

G*

rs28368148

1.45

Missense

IFNA10

[7]

19

12:113363550

C

T*

rs6489867

1.3

Intron

OAS1–OAS3

[5]

12:112919388

G

A*

rs10774671

1.2

eQTL, Splice Acceptor Variant

OAS1–OAS3

[6, 22]

12:113380008

G

A*

rs10735079

1.3

Intron

OAS1–OAS3

[5]

20

12:132489230

GC

G*

rs56106917

1.13

eQTL, Upstream

FBRSL1

[7, 8]

12:132479205

G

A*

rs4883585

1.13

Upstream

FBRSL1

[7]

21

13:112889041

C

T*

rs9577175

1.18

Downstream

ATP11A

[7, 8]

22

15:93046840

T*

A

rs4424872

1.04

Intron

RGMA

[7, 8]

23

16:89196249

G*

A

rs117169628

1.18

eQTL, Missense

SLC22A31

[7]

24

17:46142465

T*

A

rs1819040

1.1

eQTL, Intron

ARHGAP27, PLEKHM1, LINC02210-CRHR1, CRHR1, SPPL2C, MAPT, STH, KANSL1, LRRC37A, ARL17B, LRRC37A2, ARL17A, NSF, WNT3

[6, 22]

25

17:49863260

C

A*

rs3848456

1.50

regulatory

–

[7, 8]

26

17:49863303

C

T*

rs77534576

1.45

Downstream

KAT7, TAC4

[6]

27

19:10466123

T

C*

rs11085727

1.3

eQTL, Intron

TYK2

[5, 22]

19:10317045

T

A*

rs74956615

1.6

eQTL, Downstream

ICAM1, ICAM4, ICAM5, ZGLP1, FDX2, RAVER1, ICAM3, TYK2

[5, 6]

19:10352442

G*

C

rs34536443

1.5

eQTL, Missense

TYK2

[7, 8]

19:10305768

G

A*

rs73510898

1.24

eQTL, Intron

ZGLP1

[7, 8]

28

19:4719431

A

G*

rs2109069

1.4

Intron

DPP9

[5]

19:4717660

A

G*

rs12610495

1.3

Intron

DPP9

[7, 8]

29

19:48697960

C

T*

rs368565

1.15

eQTL, Intron

FUT2

[7, 8]

30

19:48867352

G*

T

rs4801778

1.1

Intron

PLEKHA4, PPP1R15A, TULP2, NUCB1

[6]

31

21:33230000

C

A*

rs17860115

1.24

eQTL, 5’UTR

IFNAR2

[7, 8, 22]

21:33242905

T*

C

rs13050728

1.23

eQTL, Intron

IFNAR2

[6, 22]

32

21:33287378

C

T*

rs8178521

1.18

eQTL, Intron

IL10RB

[7, 8, 22]

33

21:33959662

T

TAC*

rs35370143

1.26

Intron

LINC00649

[7, 8]

21:33914436

A

G*

rs12626438

1.22

Intron

LINC00649

[7]