Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Brief Communication
  • Published:

A homozygous variant in the beta-1,3-N-acetylglucosaminyltransferase 4 gene causes progressive brain atrophy and muscular dystrophy

Abstract

Protein glycosylation defects can present with early-onset brain malformations and muscular dystrophy or milder, late-onset muscular dystrophy. Here, we report a new glycosylation defect with an atypical phenotype of late-onset, progressive, severe brain atrophy and muscular dystrophy in a 47-year-old man. Exome sequencing revealed a homozygous highly deleterious c.478G>T (p.G160W) variant in the B3GNT4 gene. A knock-in mouse model replicated the patient’s muscle histology. B3GNT4 is expressed at very low levels in the thalamus, and this region was selectively preserved in the patient. The study demonstrates the first disease associated with one of the seven B3GNT galactosyltransferases and the importance of B3GNT4 in adolescence to adult muscle and CNS development.

This is a preview of subscription content, access via your institution

Access options

Buy this article

USD 39.95

Prices may be subject to local taxes which are calculated during checkout

Fig. 1: Pedigree chart demonstrating disease and genetic affection and brain and muscle MRI findings.
Fig. 2: Histopathology and α-dystroglycan glycosylation in the muscle of the patient.
Fig. 3: The B3GNT4 G134W/G134W knock-in mouse model of the human B3GNT4 deficiency.

Similar content being viewed by others

Data availability

Study data are available upon request.

References

  1. Saito F, Blank M, Jörn S, Manya H, Shimizu T, Campbell KP, et al. Aberrant glycosylation of alpha-dystroglycan causes defective binding of laminin in the muscle of chicken muscular dystrophy. FEBS Lett. 2005;579:2359–63.

    Article  CAS  PubMed  Google Scholar 

  2. Walimbe AS, Okuma H, Joseph S, Yang T, Yonekawa T, Hord JM, et al. POMK regulates dystroglycan function via LARGE1-mediated elongation of matriglycan. Elife. 2020;9:e61388.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Endo T. Glycobiology of α-dystroglycan and muscular dystrophy. J Biochem. 2015;157:1–12.

    Article  CAS  PubMed  Google Scholar 

  4. Yoshida-Moriguchi T, Campbell KP. Matriglycan: a novel polysaccharide that links dystroglycan to the basement membrane. Glycobiology. 2015;25:702–13.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Manya H, Endo T. Glycosylation with ribitol-phosphate in mammals: new insights into the O-mannosyl glycan. Biochim Biophys Acta Gen Subj. 2017;1861:2462–72.

    Article  CAS  PubMed  Google Scholar 

  6. Shiraishi N, Natsume A, Togayachi A, Endo T, Akashima T, Yamada Y, et al. Identification and characterization of three novel beta 1,3-N-acetylglucosaminyltransferases structurally related to the beta 1,3-galactosyltransferase family. J Biol Chem. 2001;276:3498–507.

    Article  CAS  PubMed  Google Scholar 

  7. Töpf A, Johnson K, Bates A, Phillips L, Chao KR, England EM, et al. Sequential targeted exome sequencing of 1001 patients affected by unexplained limb–girdle weakness. Genet Med. 2020;22:1478–88.

    Article  PubMed  PubMed Central  Google Scholar 

  8. Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17:405–24.

    Article  PubMed  PubMed Central  Google Scholar 

  9. Krag TO, Vissing J. A new mouse model of Limb-Girdle muscular dystrophy type 2I homozygous for the common L276I mutation mimicking the mild phenotype in humans. J Neuropathol Exp Neurol. 2015;74:1137–46.

    CAS  PubMed  Google Scholar 

  10. Kircher M, Witten DM, Jain P, O’Roak BJ, Cooper GM, Shendure J. A general framework for estimating the relative pathogenicity of human genetic variants. Nat Genet. 2014;46:310–15.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Tavtigian SV, Greenblatt MS, Harrison SM, Nussbaum RL, Prabhu SA, Boucher KM, et al. Modeling the ACMG/AMP variant classification guidelines as a Bayesian classification framework. Genet Med. 2018;20:1054–60.

    Article  PubMed  PubMed Central  Google Scholar 

  12. Uhlén M, Fagerberg L, Hallström BM, Lindskog C, Oksvold P, Mardinoglu A, et al. Proteomics. Tissue-based map of the human proteome. Science. 2015;347:1260419.

    Article  PubMed  Google Scholar 

  13. Ujita M, McAuliffe J, Schwientek T, Almeida R, Hindsgaul O, Clausen H, et al. Synthesis of poly-N-acetyllactosamine in core 2 branched O-glycans. The requirement of novel beta-1,4-galactosyltransferase IV and beta-1,3-n-acetylglucosaminyltransferase. J Biol Chem. 1998;273:34843–49.

    Article  CAS  PubMed  Google Scholar 

  14. Zhou D, Dinter A, Gutiérrez Gallego R, Kamerling JP, Vliegenthart JF, Berger EG, et al. A beta-1,3-N-acetylglucosaminyltransferase with poly-N-acetyllactosamine synthase activity is structurally related to beta-1,3-galactosyltransferases. Proc Natl Acad Sci USA. 1999;96:406–11.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Morise J, Kizuka Y, Yabuno K, Tonoyama Y, Hashii N, Kawasaki N, et al. Structural and biochemical characterization of O-mannose-linked human natural killer-1 glycan expressed on phosphacan in developing mouse brains. Glycobiology. 2014;24:314–24.

    Article  CAS  PubMed  Google Scholar 

Download references

Funding

The study was funded by the Danish Medical Research Council grant #7016-00095B. AT and VS are supported by the NIHR Newcastle Biomedical Research Centre. The funders had no other role than providing the funding.

Author information

Authors and Affiliations

Authors

Contributions

JV, AT, VS, and TK contributed to the conception and design of the study. JV, AT, VS, and TK contributed to the acquisition and analysis of data. JV and TK contributed to drafting the text or preparing the figures.

Corresponding author

Correspondence to John Vissing.

Ethics declarations

Competing interests

The authors declare no competing interests.

Ethical approval

The parents of the patient gave consent to all procedures, which followed institutional guidelines and were in accordance with the Helsinki declaration. The ethics committee of the Capital Region of Denmark exempted the study from normal approval as all procedures performed on the patient were part of the routine clinical workup. Genetic testing was approved by the Newcastle and North Tyneside research ethics committee (REC #09/H0906/28). Mice experiments were approved by the Danish Animal Inspectorate (permit #2019-15-0201-00286). MYO-SEQ was funded by Sanofi Genzyme, Ultragenyx, LGMD2I Research Fund, Samantha J. Brazzo Foundation, LGMD2D Foundation and Kurt+Peter Foundation, Muscular Dystrophy UK, and Coalition to Cure Calpain 3. Analysis was provided by the Broad Institute of MIT and Harvard Center for Mendelian Genomics (Broad CMG) and was funded by the National Human Genome Research Institute, the National Eye Institute, and the National Heart, Lung, and Blood Institute grant UM1 HG008900, and in part by National Human Genome Research Institute grant R01 HG009141.

Additional information

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary information

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Vissing, J., Töpf, A., Straub, V. et al. A homozygous variant in the beta-1,3-N-acetylglucosaminyltransferase 4 gene causes progressive brain atrophy and muscular dystrophy. Eur J Hum Genet 34, 288–292 (2026). https://doi.org/10.1038/s41431-025-01991-x

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Version of record:

  • Issue date:

  • DOI: https://doi.org/10.1038/s41431-025-01991-x

This article is cited by

Search

Quick links