Fig. 4: (Super-)population distribution of the alleles in TRB loci.
From: pmTR database: population matched (pm) germline allelic variants of T-cell receptor (TR) loci
A The relative super-population distribution of V, D, J and C genes for TRB locus. The population plots are represented for all super-populations (ALL), Africans only (AFR), Africans shared with one of the other super-populations (AFR-Shared) and “Non-AFR” where alleles are present in one of the populations other than Africans for AS1 (red), AS2 (green) and AS3 (blue) alleles. B Maximum Likelihood tree of the population distribution of TRBV alleles. Red label background indicates AS1 alleles, green AS2 and blue AS3 alleles. The population distribution is plotted in a binary format where each block is a population. Filled block represents the presence of that allele in at least four haplotypes in that population, otherwise the block is unfilled. A few TRAV alleles were used as outgroups. The bootstrap values are mentioned on the branches. The haplotype count of each alleles is mentioned in the outermost circle. The alleles corresponding to each gene is separated by a line and the gene name is mentioned.
