Table 2 Resource use and cost parameters.

From: Cost-effectiveness of genome-wide sequencing for unexplained developmental disabilities and multiple congenital anomalies

Parameters

Mean

Distribution

Source and assumptions

Standard testing: patients receiving nongenetic investigations or procedures

 Biochemical/metabolic workup

55%

Fixed

Expert opinion: 20–90%

 Neuroimaging (brain MRI)

40%

Fixed

Expert opinion: 30–50%

 Invasive tests (muscle biopsy)

2.5%

Fixed

Expert opinion: 0–5%

 Echocardiogram

3%

Fixed

Expert opinion: 1–5%

 Electroencephalogram

35%

Fixed

Expert opinion: 20–50%

Cost of genetic and nongenetic diagnostic tests

 CMA

$825

Gamma (2010, 2.44)

Jegathisawaran et al.9

 ES (90% trio)

$4589.40

Normal (4589.4, 45)

Based on average price paid by OOC Prior Approval Program

 GS (90% trio)

$6235.40

Weighted average based on Jegathisawaran et al.9

• GS proband

$3350

Gamma (3202, 0.96)

Jegathisawaran et al.9

• GS trio

$6556

Gamma (1992, 0.30)

Jegathisawaran et al.9

Standard genetic testing

• Test cost

$7235.40

Lognormal (8.40, 0.95)

Oei et al.23

• Physician cost

$448.20

Fixed

Cost per visit based on OHIP SOB (K222); assumed 6 medical geneticist visits on average based on clinical expert opinion

Fragile X testing

$333.90

Normal (333.9, 2.6)

Yuen et al.19 (for patients with developmental disabilities only)

Biochemical or metabolic workup

$528

Normal (528, 53)

Bélanger and Caron, 20183

Neuroimaging (brain MRI)

• Test cost

$771.60

Normal (771.6, 77)

Ontario Case Costing Initiative 2017

• Physician fees

$73.35

Fixed

OHIP SOB (X421)

Invasive procedures

• Muscle biopsy

$748.20

Normal (748.2, 75)

Rosenberg et al.34

• Physician fees

$48.65

Fixed

OHIP SOB (L864)

• Skin biopsy

$404.60

Normal (404.6, 41)

Joshi et al. ($379)35

• Physician fees

$48.65

Fixed

OHIP SOB (L864)

Echocardiogram

• Test cost

$412.90

Normal (412.9, 41)

Medical Advisory Secretariat 201036

• Physician fees

$204.05

Fixed

OHIP SOB (G570, G571, G572)

Electroencephalogram

• Test cost

$831.10

Normal (831.1, 83)

Green et al.37

• Physician fees

$47.55

Fixed

OHIP SOB (G414, G415)

Pretest genetic services

Medical geneticist (cost per session)

  

OHIP SOB (A225 for 1st session; K222 × 2 for 2nd session); Yuen et al. (CMA: 1 session only; ES/GS: 90% have 1 session, and 10% have 2 sessions)19

• 1st session (assume 1 hour)

$165

Fixed

 

• 2nd session (assume 1 hour)

$149.40

Fixed

 

Genetic counselor (cost per session; assume 1 hour)

$41.20

Fixed

Yuen et al. (CMA: 1 session only; ES/GS: 90% have 1 session, and 10% have 2 sessions)19

Post-test genetic services

 Positive finding or VUS (cost per session)

• Medical geneticist (assume 1 hour)

$149.40

Fixed

OHIP SOB (K222 × 2 for 1-h session)

• Genetic counselor (assume 1 hour)

$41.20

Fixed

Yuen et al. (if secondary finding is identified)19

Negative finding

Expert opinion: negative results are usually communicated by phone with medical geneticist; no clinical visit is needed

  1. Costs in 2019 Canadian dollars. Normal (µ, σ) denotes the normal distribution where µ is the mean and σ is the standard deviation. Gamma (α, λ) denotes the Gamma distribution where α is the shape parameter and λ is the scale parameter. Lognormal (µ, σ) denotes the lognormal distribution where µ is the mean of logs and σ is the standard deviation of logs.
  2. CMA chromosomal microarray, ES exome sequencing, GS genome sequencing, MRI magnetic resonance imaging, OHIP SOB Ontario Health Insurance Program Schedule of Benefit, ON Ontario, OOC out-of-country, VUS variant of unknown significance.