Table 3 Evidence for selective sweeps based on composite likelihood using the parametric test implemented in SweepFinder2 for the 13 populations of H. impetiginosus

From: A genome-wide scan shows evidence for local adaptation in a widespread keystone Neotropical forest tree

Genbank accession

ALTGO

BAGMT

BRAMG

CARMT

MIMGO

MOCMG

NIQGO

PANMG

POFMA

POSGO

POTGO

SECPI

SUMMG

Locus

Distance

NKXS01000006

-

-

-

-

-

112,230 (1.500)

-

-

-

-

-

-

-

Haimp10035675m.g

0

NKXS01000006

-

-

-

-

-

-

-

-

-

419,726 (1.354)

-

-

-

Haimp10035711m.g

0

NKXS01000006

-

-

236,517 (1.427)

-

-

-

-

-

-

-

-

-

-

Haimp10035685m.g

6746

NKXS01000006

-

-

-

-

-

159,053 (7.548)

-

161,198 (1.223)

-

158,525 (1.258)

159,102 (1.666)

-

-

Haimp10035682m.g

0

NKXS01000006

-

-

-

-

-

-

-

-

-

157,428 (1.201)

-

-

-

Haimp10035681m.g

401

NKXS01000006

-

-

260,870 (1.250)

-

-

-

-

-

-

-

-

-

-

Haimp10035691m.g

2005

NKXS01000006

-

-

391,890 (1.840)

-

391,782 (1.884)

-

-

-

-

391,793 (1.595)

-

-

-

Haimp10035708m.g

0

NKXS01000006

-

-

243,743 (1.684)

-

-

-

-

-

-

-

-

-

-

Haimp10035686m.g

0

NKXS01000006

-

-

252,645 (1.421)

-

-

-

-

-

-

-

-

-

-

Haimp10035689m.g

5623

NKXS01000006

-

98,062 (2.260)

-

-

-

-

-

-

-

-

-

-

-

Haimp10035674m.g

0

NKXS01000489

-

32,958 (1.478)

-

-

-

-

-

-

-

-

-

-

-

Haimp10030854m.g

0

NKXS01000489

-

-

-

-

-

-

-

-

-

-

4074 (1.224)

3965 (1.386)

-

Haimp10030846m.g

0

NKXS01000550

-

-

-

-

-

-

-

-

14,596 (1.232)

-

14,740 (1.307)

-

-

Haimp10033596m.g

0

NKXS01000585

-

-

-

-

-

-

-

185,776 (2.026)

-

-

182,515 (2.282)

-

-

Haimp10035192m.g

359

NKXS01000585

-

-

-

-

-

-

-

206,694 (2.031)

-

-

206,696 (2.337)

-

-

Haimp10035197m.g

12,958

NKXS01000585

-

-

-

-

-

-

-

188,681 (2.026)

-

-

188,674 (2.241)

-

-

Haimp10035194m.g

583

NKXS01000585

-

-

-

138,897 (1.239)

-

138,534 (1.403)

-

-

-

-

138,671 (3.325)

138,621 (2.101)

-

Haimp10035183m.g

5312

NKXS01000585

-

198,258 (1.596)

-

-

-

-

-

201,961 (2.032)

-

-

198,209 (3.217)

-

-

Haimp10035195m.g

4501

NKXS01000585

-

-

-

-

107,496 (2.011)

-

-

-

-

-

-

-

-

Haimp10035176m.g

0

NKXS01000585

-

-

-

-

-

-

-

-

121,478 (1.217)

120,102 (1.444)

-

-

-

Haimp10035181m.g

0

NKXS01000585

-

-

-

-

-

-

-

180,136 (1.957)

-

-

-

-

-

Haimp10035191m.g

3828

NKXS01000585

-

-

-

-

-

-

-

186,619 (2.026)

-

-

185,782 (2.258)

-

-

Haimp10035193m.g

0

NKXS01000585

-

-

-

-

-

-

-

172,434 (1.329)

-

-

-

-

-

Haimp10035188m.g

900

NKXS01000585

-

-

-

-

-

-

-

230,503 (1.225)

-

-

-

-

-

Haimp10035198m.g

8583

NKXS01000585

-

-

-

-

-

-

-

174,965 (1.621)

-

-

-

-

-

Haimp10035190m.g

449

NKXS01000816

-

-

-

-

-

-

-

48,479 (1.702)

-

-

49,419 (2.354)

49,055 (1.915)

-

Haimp10042856m.g

0

NKXS01001173

15,471 (1.698)

-

15,646 (1.788)

-

-

-

-

-

15,159 (1.441)

-

15,647 (1.233)

15,412 (2.193)

-

Haimp10006371m.g

0

NKXS01001173

-

-

-

-

-

-

-

-

88,292 (1.441)

-

-

-

88,217 (2.107)

Haimp10006385m.g

0

NKXS01001173

-

-

-

-

-

111,029 (2.256)

-

-

-

-

111,073 (1.202)

-

-

Haimp10006388m.g

0

NKXS01001400

-

-

-

-

-

-

-

-

-

-

41,407 (1.644)

-

-

Haimp10009243m.g

0

NKXS01001400

-

-

-

-

-

-

-

-

-

-

23,526 (1.621)

-

-

Haimp10009240m.g

0

NKXS01001400

-

57,194 (1.459)

-

-

-

-

-

-

-

-

-

-

-

Haimp10009245m.g

165

NKXS01001803

50,581 (1.349)

50,500 (1.489)

-

-

-

-

-

50,608 (1.422)

-

-

-

-

-

Haimp10012819m.g

0

NKXS01001803

-

-

-

-

-

-

-

-

112,936 (1.413)

-

112,016 (1.281)

-

-

Haimp10012826m.g

0

NKXS01002428

-

-

-

-

-

-

1,553 (1.703)

-

-

-

-

-

-

Haimp10017457m.g

0

NKXS01002428

-

-

-

-

-

27,811 (1.591)

-

-

-

-

-

-

-

Haimp10017464m.g

0

NKXS01002564

-

31,699 (2.360)

-

-

-

25,828 (2.613)

-

-

-

-

25,200 (5.889)

-

-

Haimp10018368m.g

0

NKXS01003977

-

55,907 (1.463)

-

-

-

-

-

-

-

-

-

-

-

Haimp10026776m.g

0

NKXS01003977

-

-

-

-

-

-

-

-

-

-

41,373 (1.975)

41,703 (1.397)

-

Haimp10026773m.g

0

NKXS01005306

-

-

2672 (1.517)

-

-

-

-

-

-

-

-

-

-

Haimp10033514m.g

0

NKXS01006483

-

-

-

-

-

-

-

-

-

-

50,677 (1.295)

-

-

Haimp10038613m.g

0

NKXS01006483

-

-

53,115 (1.217)

-

-

-

-

-

-

-

-

-

-

Haimp10038614m.g

0

NKXS01006685

-

-

-

-

-

-

-

-

-

-

6569 (1.602)

-

-

Haimp10039384m.g

0

NKXS01008263

-

-

-

-

-

-

-

-

-

-

19,942 (1.544)

-

-

Haimp10001090m.g

0

NKXS01008537

-

-

-

-

-

-

-

-

-

-

11,614 (1.246)

-

-

Haimp10001901m.g

0

NKXS01008537

-

-

-

-

-

-

-

-

-

-

7125 (3.171)

-

-

Haimp10001900m.g

0

NKXS01009331

-

-

-

5188 (1.551)

5622 (1.705)

-

-

5104 (1.265)

-

-

-

-

5801 (1.454)

Haimp10004318m.g

0

Number of loci

2

7

8

2

3

6

1

13

5

5

22

5

2

47

 
  1. The values are the location and the calculated composite likelihood. Only the most extreme signals above the significance cut-off are summarised in terms of the most probable location of the sweep to the nearest gene locus annotated in the genome assembly of the species. Distance is the minimum distance between the location of the sweeps in the populations and the closest locus. Zero (0) values mean that the location of the most extreme signal is within the gene locus
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