Table 4 Description of significant SNPs (bins) associated with bone weight identified by BIN-Ave-Lasso and BIN-One-Lasso
From: Genome-wide association studies using binned genotypes
Method | Numbers of SNPsa | Chr | Positionb (bp) | Nearest gene | Distance to the gene (bp) | p value |
|---|---|---|---|---|---|---|
BIN-Ave-Lasso | 1 | 14 | 62,769,117 | RIMS2 | Within | 8.58E–04 |
6 | 6 | 39,988,294-39,997,880 | LCORL | 996,182 | 9.37E–03 | |
BIN-One-Lasso | 1 | 14 | 62,769,117 | RIMS2 | Within | 3.52E–53 |
6 | 6 | 39,988,294-39,997,880 | LCORL | 996,182 | 6.86E–09 | |
1 | 21 | 5,309,649 | SELENOS | 75,449 | 1.81E–08 | |
2 | 15 | 9,229,362-9,236,537 | Novel gene | 306,521 | 9.61E–05 | |
2 | 6 | 38,466,628-38,468,901 | LAP3 | 105,689 | 1.43E–04 | |
1 | 25 | 21,737,543 | CHP2 | 76,232 | 8.23E–04 | |
1 | 10 | 38,729,744 | EPB42 | 190,928 | 9.92E–04 | |
1 | 1 | 42,230,085 | CLDND1 | 221,660 | 2.56E–03 | |
1 | 12 | 87,865,066 | MYO16 | 53,674 | 4.62E–03 | |
1 | 6 | 39,932,557 | LCORL | 940,445 | 8.98E–03 | |
1 | 6 | 41,587,207 | bta-mir-218-1 | 42,069 | 2.82E–02 | |
1 | 1 | 63,037,677 | Novel gene | 644,796 | 2.94E–02 | |
3 | 6 | 41,186,810-41,194,565 | SLIT2 | 42,024 | 3.04E–02 | |
1 | 4 | 62,537,378 | NPSR1 | Within | 3.05E–02 |
