Heredity

Table 2 Summary statistics of A. cerana csd sequences, based on the HVR-flanking regions.

From: Global allele polymorphism indicates a high rate of allele genesis at a locus under balancing selection

Sample location	n	Sites	h	S	Hd	π total	π_s	π_n	π_n / π_s	θ_w	Tajima’s D	Fu’s F_s	Fay and Wu’s H_n
Samut Songkhram, Thailand	22	351	20	49	0.991	0.03199 ± 0.00247	0.04781	0.02837	0.5934	0.04142	−0.900	−8.109**	−1.248
Maha Sarakham, Thailand	15	381	15	45	1.000	0.02397 ± 0.00274	0.03715	0.02054	0.5529	0.03713	−1.521*	−7.958**	−2.057*
Flores, Indonesia	15	369	13	39	0.981	0.03244 ± 0.00323	0.04889	0.02878	0.5887	0.03334	−0.115	−2.628	−0.877
Tenom, Borneo	10	399	10	32	1.000	0.02551 ± 0.00263	0.03361	0.02371	0.7054	0.03012	−0.739	−3.431	−0.462
Sagada, Luzon, Philippines	7	387	7	27	1.000	0.02535 ± 0.00242	0.02857	0.02499	0.8747	0.02848	−0.625	−1.596	0.098
Mysore, India	25	381	25	59	1.000	0.02617 ± 0.00254	0.04657	0.02074	0.4454	0.04310	−1.526**	−18.251***	−1.485*
Bangalore, India	8	387	8	28	1.000	0.02261 ± 0.00306	0.03330	0.01990	0.5976	0.02890	−1.152	−2.466	−1.613*
Beijing, China	19	384	19	46	1.000	0.02668 ± 0.00204	0.03553	0.02471	0.6955	0.03651	−1.094	−11.145**	−1.638*
Shandong, China	27	378	25	47	0.994	0.02398 ± 0.00186	0.03173	0.02224	0.7009	0.03500	−1.197*	−15.486***	−1.749*
Sichuan, China	22	375	20	44	0.991	0.02756 ± 0.00184	0.04812	0.02222	0.4618	0.03365	−0.712	−8.756**	−1.216
Vanimo, Papua New Guinea	14	375	14	44	1.000	0.03053 ± 0.00307	0.05086	0.02545	0.5004	0.03857	−0.911	−5.921*	−0.896
Makira Island, Solomon Islands	8	381	8	31	1.000	0.02709 ± 0.00390	0.04641	0.02206	0.4753	0.03239	−0.870	−2.109	−0.980
Cairns, Australia	7	381	7	31	1.000	0.03112 ± 0.00371	0.05376	0.02538	0.4720	0.03428	−0.527	−1.266	−0.191
Total A. cerana	201	327	146	111	0.996	0.03054 ± 0.00090	0.05042	0.02566	0.5089	0.06503	−1.656**	−33.153***	−1.731*

Calculations were performed using the total dataset and each sample location separately: number of sequences per location (n), number of nucleotides (sites), number of haplotypes (h), number of variable sites (S), haplotype diversity (Hd), average pairwise nucleotide diversity (π) for all (π total), synonymous (π_s) and nonsynonomous (π_n), Watterson’s theta (θ_w),Tajima’s D, Fu’s F_s and Fay and Wu’s H_n.
*P < 0.05, **P < 0.01, *** P < 0.001.

Back to article page

Search

Advanced search

Quick links