Fig. 5: Manhattan plot for BW12. | Heredity

Fig. 5: Manhattan plot for BW12.

From: Genome-wide association study reveals the genetic determinism of growth traits in a Gushi-Anka F2 chicken population

Fig. 5: Manhattan plot for BW12.

Each dot in this figure corresponds to an SNP within the data set. The graph above is the Manhattan plot for BW12. The horizontal red dashed line denotes genome-wide significance (−log10(P) > 5.72). The figure below is the enlarged QTL interval diagram. Gray dots represent the most significant SNP loci (Chr1_169,479,288). The color of other SNPs represents the degree of LD with the most significant SNP loci (r2 value). The remaining SNPs with r2 > 0.3 and −log10(P) < 4 genomic regions were obtained within a total range of 3 Mb (Chr1:167,553,224–170,518,530; vertical black dashed line).

Back to article page