Fig. 5: Merge of loci showing strong positive selection and PD with those distinct in Oregon. | Heredity

Fig. 5: Merge of loci showing strong positive selection and PD with those distinct in Oregon.

From: Transcriptome-wide analysis of introgression-resistant regions reveals genetic divergence genes under positive selection in Populus trichocarpa

Fig. 5

a Loci identified by Dim 3 and 5 of the MFA distinguish Oregon from the other demes. Red asterisks indicate loci under strong positive selection only for Oregon and/or South-Oregon (more detail in Table 1). Regions with very low π and high FST in Oregon relative to the other demes (Supplementary Figs. S3 and S5) shaded in light gray in chr01, 02, and 15. Loci showing PD across demes or in Oregon based on the HMM are marked at the top (in black) or bottom (in gray) of each panel, respectively. PD genes were also marked in black dots. b P-values were calculated using the MIC test for allele frequencies between Oregon and the other demes. The horizontal red line marks the significance at α = 0.05.

Back to article page