Table 4 The accuracy of EBV (mean (SD) of 50 replicates) in the scenario of (a) S₁₂L_2 × 3, (b) S₁₂L_ran, and (c) S₂₄L_2×3 for trait 1 using univariate model, based on group or individual records with different proportion of individuals having genotypes.

From: Prediction of breeding values for group-recorded traits including genomic information and an individually recorded correlated trait

(a) Scenario^a	Genotype proportion	Model	Animals^b	Valid_R^c			Valid_nR^c
(a) Scenario^a	Genotype proportion	Model	Animals^b	Group records	Indiv. records	G/I ratio^d	Group records	Indiv. records	G/I ratio
S₁₂L_2 × 3	100%	GBLUP	All	0.63 (0.03)	0.89 (0.01)	0.71 (0.03)	0.47 (0.05)	0.81 (0.01)	0.58 (0.05)
			Group I	0.62 (0.05)	0.89 (0.01)	0.70 (0.04)	0.47 (0.07)	0.81 (0.02)	0.58 (0.06)
			Group II	0.63 (0.03)	0.89 (0.02)	0.71 (0.03)	0.47 (0.05)	0.81 (0.01)	0.58 (0.05)
	30%	ssGBLUP	All	0.56 (0.03)	0.77 (0.01)	0.73 (0.03)	0.40 (0.05)	0.64 (0.02)	0.63 (0.05)
			Group I	0.60 (0.05)	0.84 (0.02)	0.71 (0.04)	0.44 (0.06)	0.74 (0.03)	0.59 (0.05)
			Group II	0.56 (0.03)	0.76 (0.01)	0.73 (0.03)	0.39 (0.06)	0.62 (0.02)	0.64 (0.06)
	0%	PBLUP	All	0.54 (0.03)	0.74 (0.01)	0.73 (0.03)	0.37 (0.05)	0.56 (0.03)	0.66 (0.05)
			Group I	0.55 (0.04)	0.74 (0.03)	0.73 (0.03)	0.36 (0.06)	0.56 (0.04)	0.65 (0.05)
			Group II	0.54 (0.03)	0.74 (0.01)	0.73 (0.03)	0.37 (0.05)	0.56 (0.03)	0.66 (0.05)
(b) Scenario^e
S₁₂L_ran	100%	GBLUP	All	0.55 (0.04)	0.89 (0.01)	0.62 (0.04)	0.40 (0.05)	0.81 (0.01)	0.49 (0.05)
			Group I	0.55 (0.06)	0.89 (0.01)	0.62 (0.05)	0.40 (0.06)	0.81 (0.02)	0.50 (0.06)
			Group II	0.55 (0.04)	0.89 (0.01)	0.62 (0.04)	0.40 (0.05)	0.81 (0.01)	0.49 (0.05)
	30%	ssGBLUP	All	0.49 (0.04)	0.78 (0.01)	0.63 (0.04)	0.32 (0.05)	0.64 (0.02)	0.51 (0.05)
			Group I	0.52 (0.06)	0.84 (0.02)	0.61 (0.05)	0.36 (0.06)	0.74 (0.03)	0.49 (0.05)
			Group II	0.48 (0.04)	0.76 (0.01)	0.63 (0.04)	0.32 (0.05)	0.62 (0.02)	0.51 (0.05)
	0%	PBLUP	All	0.46 (0.04)	0.75 (0.01)	0.62 (0.04)	0.29 (0.06)	0.56 (0.03)	0.52 (0.06)
			Group I	0.46 (0.06)	0.74 (0.03)	0.62 (0.05)	0.29 (0.08)	0.56 (0.04)	0.51 (0.07)
			Group II	0.46 (0.04)	0.75 (0.01)	0.63 (0.04)	0.29 (0.06)	0.56 (0.03)	0.52 (0.06)
(c) Scenario^f
S₂₄L_2 × 3	100%	GBLUP	All	0.48 (0.04)	0.89 (0.01)	0.54 (0.04)	0.33 (0.06)	0.81 (0.02)	0.40 (0.05)
			Group I	0.48 (0.07)	0.89 (0.01)	0.53 (0.05)	0.32 (0.07)	0.81 (0.02)	0.40 (0.06)
			Group II	0.48 (0.04)	0.89 (0.01)	0.54 (0.04)	0.33 (0.06)	0.81 (0.01)	0.41 (0.05)
	30%	ssGBLUP	All	0.44 (0.04)	0.78 (0.01)	0.57 (0.04)	0.29 (0.07)	0.64 (0.02)	0.45 (0.06)
			Group I	0.47 (0.06)	0.84 (0.02)	0.55 (0.05)	0.31 (0.07)	0.74 (0.03)	0.42 (0.06)
			Group II	0.44 (0.04)	0.76 (0.01)	0.57 (0.04)	0.28 (0.07)	0.62 (0.02)	0.46 (0.06)
	0%	PBLUP	All	0.43 (0.04)	0.75 (0.01)	0.58 (0.04)	0.27 (0.07)	0.56 (0.03)	0.48 (0.06)
			Group I	0.43 (0.06)	0.74 (0.03)	0.58 (0.05)	0.27 (0.07)	0.56 (0.05)	0.48 (0.07)
			Group II	0.43 (0.04)	0.75 (0.01)	0.58 (0.04)	0.27 (0.07)	0.56 (0.03)	0.48 (0.06)

Accuracy was measured as correlation between true BV and EBV.
^aS₁₂L_2 × 3, group size = 12, a litter into two groups.
^bAll: all animals; Group I: the animals which were genotyped in the 30% genotyping scenario; Group II: the animals which were not genotyped in the 30% genotyping scenario.
^cValid_R, validation for animals with records; Valid_nR, validation for animals without records.
^dG/I ratio, ratio of accuracy for EBV predicted using group records to accuracy of EBV predicted using individual records.
^eS₁₂L_ran, group size = 12, individuals random assigned to groups.
^fS₂₄L_2 × 3, group size = 24, a litter into two groups.

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Table 4 The accuracy of EBV (mean (SD) of 50 replicates) in the scenario of (a) S₁₂L_2 × 3, (b) S₁₂L_ran, and (c) S₂₄L_2×3 for trait 1 using univariate model, based on group or individual records with different proportion of individuals having genotypes.

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