Table 5 The estimates of variance components (mean (SD) over 50 replicates) in scenario S12L2 × 3 (group size = 12, individuals from four litters per pen) for trait 1 and trait 2 using multivariate model based on group or individual records with different proportion of individuals having genotypes.
Record (trait 1 + trait 2) | Genotype proportion | Model | \(\sigma _{c_1}^2\) | \(\sigma _{l_1}^2\) | \(\sigma _{a_1}^2\) | \(\sigma _{e_1}^2\) | \(\sigma _{c_2}^2\) | \(\sigma _{l_2}^2\) | \(\sigma _{a_2}^2\) | \(\sigma _{e_2}^2\) | \(\sigma _{c_1,c_2}\) | \(\sigma _{l_1,l_2}\) | \(\sigma _{a_1,a_2}\) | \(\sigma _{e_1,e_2}\) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Simulated | 10 | 10 | 30 | 50 | 40 | 40 | 100 | 220 | 6 | 6 | 43.82 | 52.44 | ||
Trait 1 group + trait 2 individual | 100% | GBLUP | 10.23 (2.52) | 11.25 (4.90) | 30.40 (5.09) | 43.76 (22.98) | 39.40 (3.59) | 40.33 (3.01) | 98.49 (6.85) | 219.08 (4.46) | 11.16 (1.31) | 6.09 (2.76) | 44.79 (4.87) | 0 |
30% | ssGBLUP | 10.23 (2.53) | 10.86 (5.33) | 32.56 (6.51) | 42.74 (23.85) | 39.31 (3.84) | 38.19 (3.14) | 109.51 (8.58) | 214.18 (6.39) | 10.97 (1.49) | 5.56 (3.10) | 48.79 (6.82) | 0 | |
0% | PBLUP | 10.34 (2.72) | 11.47 (5.28) | 31.14 (7.38) | 42.73 (24.89) | 39.40 (3.86) | 39.84 (3.44) | 103.43 (7.81) | 218.22 (6.52) | 11.18 (1.55) | 6.36 (3.34) | 45.95 (7.63) | 0 | |
Trait 1 individual + trait 2 individual | 100% | GBLUP | 9.88 (0.72) | 10.02 (0.81) | 29.74 (1.83) | 50.00 (0.74) | 39.28 (3.58) | 40.32 (2.96) | 98.48 (6.88) | 219.17 (4.51) | 5.83 (1.18) | 5.94 (1.26) | 43.47 (2.73) | 52.43 (1.42) |
30% | ssGBLUP | 9.90 (0.79) | 9.56 (0.94) | 32.41 (2.55) | 48.67 (1.39) | 39.29 (3.81) | 38.32 (3.20) | 109.14 (8.53) | 214.30 (6.47) | 5.86 (1.29) | 5.30 (1.45) | 47.46 (3.55) | 50.20 (2.56) | |
0% | PBLUP | 9.90 (0.82) | 10.06 (1.00) | 30.29 (2.84) | 50.08 (1.65) | 39.35 (3.86) | 39.92 (3.61) | 102.73 (7.55) | 218.60 (6.47) | 5.88 (1.36) | 5.96 (1.57) | 44.59 (3.81) | 52.17 (2.83) |
