Table 2 Genetic diversity indices for Pitcairnia flammea species complex based on cpDNA (sequence data) and nDNA (SSR data).

From: From micro- to macroevolution: insights from a Neotropical bromeliad with high population genetic structure adapted to rock outcrops

Population

cpDNA (sequence)

nDNA (SSR)

N

S

Hd

π

NH

Haplotypes

N

A

Ar

HO

HE

FIS

STES

4

0

0

0

1

H1

19

4.3

3.276

0.490

0.522

0.149***

CARMG

4

14

0.5

0.0047

2

H2, H3

23

6.9

4.319

0.526

0.608

0.084***

CAPES

8

0

0

0

1

H4

22

1.5

1.220

0.035

0.042

0.216

MTMG

5

0

0

0

1

H5

20

7.5

4.956

0.657

0.733

0.099***

DESRJ

4

0

0

0

1

H6

20

6.3

4.208

0.528

0.685

0.289***

SMARJ

8

0

0

0

1

H7

21

3.1

2.642

0.434

0.484

0.061***

NFLRJ

7

0

0

0

1

H8

20

3.4

2.555

0.313

0.358

0.111*

NFRJ

8

0

0

0

1

H9

21

6.6

4.762

0.471

0.745

0.361***

MPPR

7

0

0

0

1

H10

25

6.5

3.997

0.497

0.592

0.165***

IBIMG-fla

9

1

0.222

0.0001

2

H11, H12

20

3.6

2.709

0.375

0.439

0.181***

IBIMG-flo

6

0

0

0

1

H13

16

4.8

3.774

0.625

0.622

–0.030***

IBIMG-ceu

8

0

0

0

1

H14

20

8.9

5.268

0.709

0.687

–0.059***

TERJ-co

9

0

0

0

1

H15

21

8.9

5.610

0.524

0.789

0.352***

TERJ-fla

8

0

0

0

1

H16

24

9.1

4.775

0.514

0.646

0.224***

GARJ

8

0

0

0

1

H16

12

5

4.144

0.673

0.644

–0.060

MFSP

9

0

0

0

1

H17

24

8.4

4.782

0.597

0.655

0.083***

PARJ

6

0

0

0

1

H18

16

4.3

3.279

0.543

0.545

-0.009**

PISP

8

0

0

0

1

H19

22

3.5

2.727

0.425

0.465

0.066

SSSP

5

0

0

0

1

H20

27

3.8

3.012

0.315

0.485

0.343***

PGSP-fla

7

0

0

0

1

H21

7

2.6

2.557

0.264

0.339

0.152

PGSP-sp

7

0

0

0

1

H22

7

2.6

2.599

0.509

0.479

–0.090

ATISP

8

0

0

0

1

H23

22

5.5

3.888

0.521

0.637

0.182***

BESP

8

0

0

0

1

H21

21

3.1

2.358

0.243

0.344

0.329***

JURSP

9

1

0.222

0.0001

2

H24, H25

28

5.1

3.537

0.341

0.604

0.415***

MCPR

6

0

0

0

1

H26

23

6.7

4.540

0.495

0.613

0.241***

  1. Inbreeding coefficients (FIS) departing significantly from Hardy–Weinberg equilibrium (HWE) are indicated by asterisks (*P < 0.05, **P < 0.01, ***P < 0.001).
  2. N number of samples, S number of polymorphic sites, NH number of haplotypes, Hd haplotype diversity, π nucleotide diversity, A number of alleles, Ar allele richness, HO mean observed heterozygosity, HE mean expected heterozygosity, FIS inbreeding coefficient.
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