Table 1 Summary of outlier SNPs detected jointly by PCAdapt (Luu et al. 2017) and Outflank (Whitlock and Lotterhos 2015).

From: Key triggers of adaptive genetic variability of sessile oak [Q. petraea (Matt.) Liebl.] from the Balkan refugia: outlier detection and association of SNP loci from ddRAD-seq data

 

PCAdapt

Outflank

SNP

p-value

q-value

-Log10(p-value)

He

FST

q-value

p-value

50083_64

6.110E-07

1.665E-04

6.214E + 00

0.125

0.830

0.000E + 00

0.000E + 00

96506_153

3.770E-08

1.620E-05

7.423E + 00

0.165

0.227

2.584E-04

5.086E-06

96534_88

7.720E-09

1.080E-05

8.113E + 00

0.190

0.217

6.549E-04

1.450E-05

180975_104

1.810E-08

1.200E-05

7.742E + 00

0.251

0.237

2.574E-04

4.855E-06

227780_278

8.270E-07

1.969E-04

6.083E + 00

0.338

0.233

1.968E-04

3.551E-06

238771_249

2.240E-08

1.200E-05

7.650E + 00

0.115

0.908

0.000E + 00

0.000E + 00

277051_56

1.010E-08

1.080E-05

7.997E + 00

0.296

0.313

5.945E-07

8.775E-09

361438_297

1.440E-05

1.618E-03

4.843E + 00

0.371

0.264

1.427E-05

2.224E-07

437832_228

2.880E-06

4.415E-04

5.540E + 00

0.132

0.200

3.994E-03

1.015E-04

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