Table 3 The SNP, subspecies of origin (Subspecies) chromosomal position (Chr:Pos), control analysis allele frequency (Control Freq), Bos indicus allele frequency (Bi Freq), Bos taurus allele frequency (Bt Freq), Bos indicus x Bos taurus allele frequency (Bx freq), genes and biological function associated with the four subspecies-specific SNP identified using the subspecies-specific X-matrix in BayesR analysis.

From: Concurrently mapping quantitative trait loci associations from multiple subspecies within hybrid populations

SNP

Subspecies

Chr:Pos

Control Freq

Bi Freq

Bt Freq

Bx Freq

Gene

Biological Function

Identified Species

BOVINEHD1200027774

Bx

12:31772526

0.98

0.99

1.00

0.99

FLT1

Follicle growth, female fertility

Sheepa,b Ratsc

BOVINEHD0200001401

Bt

2:4981764

0.87

0.98

0.95

0.94

MY07B

Pre-eclampsia

Humansd

BOVINEHD0300022359

Bt

3:771374444

0.64

0.98

0.76

0.89

WLS

Ovulation and female fertility

Micee

BOVINEHD0400006614

Bi

4:22464663

0.20

0.82

0.67

0.71

DGKβ

Dopaminergic transmission in pituitary gland

Ratsf

  1. aXu et al. 2018.
  2. bGhiasi and Abdollahi-Arpanahi 2021.
  3. cCelik-Ozenci et al. 2003.
  4. dMohamad et al. 2020.
  5. eChen et al. 2021.
  6. fHozumi et al. 2010.