Table 3 The SNP, subspecies of origin (Subspecies) chromosomal position (Chr:Pos), control analysis allele frequency (Control Freq), Bos indicus allele frequency (Bi Freq), Bos taurus allele frequency (Bt Freq), Bos indicus x Bos taurus allele frequency (Bx freq), genes and biological function associated with the four subspecies-specific SNP identified using the subspecies-specific X-matrix in BayesR analysis.
SNP | Subspecies | Chr:Pos | Control Freq | Bi Freq | Bt Freq | Bx Freq | Gene | Biological Function | Identified Species |
|---|---|---|---|---|---|---|---|---|---|
BOVINEHD1200027774 | Bx | 12:31772526 | 0.98 | 0.99 | 1.00 | 0.99 | FLT1 | Follicle growth, female fertility | Sheepa,b Ratsc |
BOVINEHD0200001401 | Bt | 2:4981764 | 0.87 | 0.98 | 0.95 | 0.94 | MY07B | Pre-eclampsia | Humansd |
BOVINEHD0300022359 | Bt | 3:771374444 | 0.64 | 0.98 | 0.76 | 0.89 | WLS | Ovulation and female fertility | Micee |
BOVINEHD0400006614 | Bi | 4:22464663 | 0.20 | 0.82 | 0.67 | 0.71 | DGKβ | Dopaminergic transmission in pituitary gland | Ratsf |