Table 2 Comparison of mapping reference utility of four pepper assemblies

From: Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library

 
  1. Paired-end whole-genome sequences for three pepper recombinant inbred line (RIL) samples were aligned using the CLC Genomics Workbench v8.5.1 to the UCD10X v1.0, CM334 v1.55, Zunla-1 v2.0, and Chiltepin v2.0 genome reference sequences. Number of mapped reads, percentage of mapped reads, number of non-specific matches within mapped reads, and number of reads in pairs are shown in numbers (left) and relative ratios (right). Relative ratio results are highlighted on a spectrum from higherquality (green) to lower quality (red).
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